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Report for CCDS93953.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93953.1 Public Homo sapiens 6 UBE3D 24 110 108 CCDS HistoryNCBI Gene:90025Re-query CCDS DB by CCDS ID:93953.1Re-query CCDS DB by GeneID:90025See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93953.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000509102.5 ENSP00000427101.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000509102.5Link to Ensembl Protein Viewer:ENSP00000427101.1Re-query CCDS DB by Nucleotide ID:ENST00000509102Re-query CCDS DB by Protein ID:ENSP00000427101
Current member NCBI NM_001410933.1 NP_001397862.1 Accepted alive Link to Nucleotide Sequence:NM_001410933.1Link to Protein Sequence:NP_001397862.1Re-query CCDS DB by Nucleotide ID:NM_001410933Re-query CCDS DB by Protein ID:NP_001397862Link to BLAST:NP_001397862.1

Chromosomal Locations for CCDS 93953.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 83019102 83019136 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83022479 83022561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83023969 83024038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83038416 83038485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83044428 83044659 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83054148 83054238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83057826 83058022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83065642 83065718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (855 nt):
ATGGCGGCTTCTGCGGCGGAGACGCGCGTGTTTCTGGAGGTGCGGGGACAGCTGCAGAGCGCGCTTCTGA
TCCTGGGAGAACCGAAAGAAGGAGGTATGCCCATGAATATTTCCATAATGCCATCTTCACTCCAGATGAA
AACCCCTGAAGGCTGCACAGAAATCCAGCTTCCAGCAGAGGTCAGGCTTGTACCTTCCTCTTGCCGTGGG
CTACAGTTTGTTGTTGGAGATGGACTGCACCTGCGACTGCAGACGCAAGCAAAATTAGGCACAAAACTGA
TTTCAATGTTTAATCAAAGCTCGCAAACCCAAGAATGTTGCACGTTTTATTGCCAATCCTGCGGTGAAGT
CATAATAAAAGACAGGAAGCTCCTCAGGGTGCTCCCACTGCCGAGTGAGAACTGGGGAGCTCTAGTTGGA
GAATGGTGTTGTCATCCTGACCCCTTTGCTAATAAATCACTTCATCCGCAAGAGAATGACTGTTTTATTG
GAGACTCTTTCTTCTTGGTGAATTTAAGAACCAGTTTGTGGCAGCAAAGACCTGAACTATCCCCAGTGGA
GATGTGCTGTGTTTCTTCTGACAACCATTGTAAATTGGAACCAAAGGCAAATACCAAAGTAATTTGTAAG
CGTTGCAAGGTAATGTTGGGAGAGACCGTGTCATCAGAAACCACCAAGTTTTATATGACAGAGATAATTA
TTCAGTCATCTGAGAGGAGTTTTCCTATCATACCAAGGTCTTGGTTTGTCCAGAGCGTGATCGCCCAGTG
TCTGGTGCAGCTCTCCTCTGCTAGAAGCACTTTTAGATTCACGATTCAAGCTATGGCTTTTAAATTCAGA
CAGTTTGGTGATTGA

Translation (284 aa):
MAASAAETRVFLEVRGQLQSALLILGEPKEGGMPMNISIMPSSLQMKTPEGCTEIQLPAEVRLVPSSCRG
LQFVVGDGLHLRLQTQAKLGTKLISMFNQSSQTQECCTFYCQSCGEVIIKDRKLLRVLPLPSENWGALVG
EWCCHPDPFANKSLHPQENDCFIGDSFFLVNLRTSLWQQRPELSPVEMCCVSSDNHCKLEPKANTKVICK
RCKVMLGETVSSETTKFYMTEIIIQSSERSFPIIPRSWFVQSVIAQCLVQLSSARSTFRFTIQAMAFKFR
QFGD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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