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Report for CCDS93930.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
93930.1 |
Public |
Homo sapiens |
6 |
PTCHD4 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:442213](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:93930.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:442213](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 6 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 93930.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
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![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000398738.3 |
ENSP00000381722.3 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000398738.3](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000381722.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000398738](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000381722](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
|
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001410910.1 |
NP_001397839.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001410910.1](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001397839.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001410910](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001397839](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001397839.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 93930.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (927 nt): ATGCGACGGCCGGGAGCGCCTGCGAGCTGGATCTGGTGGAGGATGCTGCGGCAGGTGCTTCGCAGAGGGC TCCAGTCGTTCTGCCACAGGCTGGGTTTGTGCGTGAGCCGGCACCCGGTCTTTTTCCTCACCGTGCCCGC AGTCCTGACAATCACCTTCGGCCTCAGCGCGCTCAACCGCTTCCAGCCCGAGGGCGACCTGGAGCGCCTG GTCGCTCCCAGCCACAGCCTGGCCAAGATCGAGCGCAGCCTGGCCAGCAGCCTTTTCCCCCTGGACCAGT CCAAAAGCCAGCTCTATTCGGACTTACACACCCCTGGGAGGTATGGCAGGGTGATCCTCCTCTCCCCAAC CGGGGACAATATTTTGCTCCAGGCTGAGGGGATCCTGCAGACCCACCGAGCCGTGCTGGAAATGAAGGAT GGGAGGAACAGTTTTATTGGACACCAACTGGGCGGGGTAGTGGAAGTGCCAAACAGCAAAGATCAGCGGG TCAAGTCAGCCAGAGCCATTCAAATCACCTACTACCTCCAGACCTATGGCTCTGCCACCCAAGACCTCAT AGGGGAGAAGTGGGAGAATGAGTTCTGTAAGCTTATAAGGAAGCTCCAGGAGGAGCATCAAGAACTCCAG CTCTACTCTTTAGCATCCTTTAGCCTCTGGAGGGACTTTCATAAGACCAGCATCCTGGCCAGAAGCAAGG TCCTGGTGAGCCTCGTGCTGATCCTGACCACAGCCACCCTCTCCAGCTCCATGAAGGACTGCTTGCGCAG TAAGCCCTTCCTGGGCCTCCTGGGGGTGCTCACAGTATGCATCTCCATCATCACAGCAGCAGGGATCTTC TTCATCACCGATGGAAAGTACAACTCCACCCTGCTGGGAATCCCGTTCTTCGCCATGGGCATCTCCACTG AATTTACCTCAAGCTAG
Translation (308 aa): MRRPGAPASWIWWRMLRQVLRRGLQSFCHRLGLCVSRHPVFFLTVPAVLTITFGLSALNRFQPEGDLERL VAPSHSLAKIERSLASSLFPLDQSKSQLYSDLHTPGRYGRVILLSPTGDNILLQAEGILQTHRAVLEMKD GRNSFIGHQLGGVVEVPNSKDQRVKSARAIQITYYLQTYGSATQDLIGEKWENEFCKLIRKLQEEHQELQ LYSLASFSLWRDFHKTSILARSKVLVSLVLILTTATLSSSMKDCLRSKPFLGLLGVLTVCISIITAAGIF FITDGKYNSTLLGIPFFAMGISTEFTSS
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