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Report for CCDS93929.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93929.1 Public Homo sapiens 6 PTCHD4 24 110 108 CCDS HistoryNCBI Gene:442213Re-query CCDS DB by CCDS ID:93929.1Re-query CCDS DB by GeneID:442213See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93929.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000339488.9 ENSP00000341914.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000339488.9Link to Ensembl Protein Viewer:ENSP00000341914.5Re-query CCDS DB by Nucleotide ID:ENST00000339488Re-query CCDS DB by Protein ID:ENSP00000341914
Original member Current member NCBI NM_001384253.1 NP_001371182.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001384253.1Link to Protein Sequence:NP_001371182.1Re-query CCDS DB by Nucleotide ID:NM_001384253Re-query CCDS DB by Protein ID:NP_001371182Link to BLAST:NP_001371182.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001371182.1 843 Q6ZW05-3 843 100% 0 0

Chromosomal Locations for CCDS 93929.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 47878303 47879936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48008634 48009114 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48068230 48068641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48068953 48068957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2532 nt):
ATGCGACGGCCGGGAGCGCCTGCGAGCTGGATCTGGTGGAGGATGCTGCGGCAGGTGCTTCGCAGAGGGC
TCCAGTCGTTCTGCCACAGGCTGGGTTTGTGCGTGAGCCGGCACCCGGTCTTTTTCCTCACCGTGCCCGC
AGTCCTGACAATCACCTTCGGCCTCAGCGCGCTCAACCGCTTCCAGCCCGAGGGCGACCTGGAGCGCCTG
GTCGCTCCCAGCCACAGCCTGGCCAAGATCGAGCGCAGCCTGGCCAGCAGCCTTTTCCCCCTGGACCAGT
CCAAAAGCCAGCTCTATTCGGACTTACACACCCCTGGGAGGTATGGCAGGGTGATCCTCCTCTCCCCAAC
CGGGGACAATATTTTGCTCCAGGCTGAGGGGATCCTGCAGACCCACCGAGCCGTGCTGGAAATGAAGGAT
GGGAGGAACAGTTTTATTGGACACCAACTGGGCGGGGTAGTGGAAGTGCCAAACAGCAAAGATCAGCGGG
TCAAGTCAGCCAGAGCCATTCAAATCACCTACTACCTCCAGACCTATGGCTCTGCCACCCAAGACCTCAT
AGGGGAGAAGTGGGAGAATGAGTTCTGTAAGCTTATAAGGAAGCTCCAGGAGGAGCATCAAGAACTCCAG
CTCTACTCTTTAGCATCCTTTAGCCTCTGGAGGGACTTTCATAAGACCAGCATCCTGGCCAGAAGCAAGG
TCCTGGTGAGCCTCGTGCTGATCCTGACCACAGCCACCCTCTCCAGCTCCATGAAGGACTGCTTGCGCAG
TAAGCCCTTCCTGGGCCTCCTGGGGGTGCTCACAGTATGCATCTCCATCATCACAGCAGCAGGGATCTTC
TTCATCACCGATGGAAAGTACAACTCCACCCTGCTGGGAATCCCGTTCTTCGCCATGGGTCATGGAACTA
AAGGAGTGTTTGAGCTTCTGTCCGGATGGCGGAGAACCAAAGAGAACTTGCCCTTCAAAGACAGGATAGC
AGATGCCTATTCTGATGTGATGGTCACCTATACCATGACCAGCTCCCTGTACTTCATCACTTTTGGCATG
GGTGCCAGCCCATTCACAAACATAGAGGCTGTGAAGGTCTTCTGTCAAAACATGTGTGTCTCTATTCTGT
TGAACTACTTCTACATTTTCTCCTTCTTTGGCTCCTGTCTGGTCTTTGCTGGCCAACTAGAGCAAAACCG
CTACCACAGCATCTTTTGCTGTAAGATCCCTTCTGCAGAATACCTGGATCGCAAACCTGTGTGGTTCCAG
ACAGTGATGAGTGATGGGCATCAACAGACGTCCCATCATGAGACGAACCCCTACCAGCACCACTTCATTC
AGCACTTCCTCCGTGAACATTATAATGAATGGATTACCAATATATATGTGAAGCCATTTGTTGTCATCCT
CTATCTCATTTATGCCTCCTTCTCCTTCATGGGGTGCTTACAGATCAGTGACGGAGCCAACATCATCAAT
CTACTAGCCAGTGATTCGCCAAGTGTTTCCTATGCCATGGTTCAGCAGAAATATTTCAGCAACTATAGCC
CTGTGATAGGATTCTACGTCTATGAGCCCCTAGAGTACTGGAACAGCAGCGTCCAGGATGACCTAAGAAG
ACTCTGTAGTGGATTCACTGCAGTGTCCTGGGTGGAGCAGTACTACCAGTTCCTGAAAGTCAGCAACGTC
AGTGCCAATAACAAAAGTGACTTCATCAGTGTCCTGCAAAGCTCATTTTTAAAAAAGCCAGAATTCCAGC
ATTTTCGAAATGATATCATCTTCTCCAAGGCAGGGGATGAAAGCAATATCATTGCTTCTCGCTTGTATCT
GGTGGCCAGGACTAGCAGAGACAAGCAGAAAGAAATCACAGAAGTGTTGGAAAAGCTGAGGCCCCTATCC
CTCTCAAAGAGCATCCGATTCATCGTGTTCAACCCCTCCTTTGTCTTCATGGACCATTACAGCTTGTCTG
TCACAGTGCCTGTTCTGATTGCAGGCTTTGGTGTTCTCCTGGTGTTAATCCTGACTTTTTTCCTAGTGAT
CCACCCTCTGGGAAACTTCTGGCTAATTCTTAGCGTCACCTCAATTGAGCTGGGCGTTCTGGGCTTAATG
ACATTATGGAACGTCGACATGGATTGCATTTCTATCTTGTGCCTTATCTACACCTTGAATTTCGCCATTG
ACCACTGTGCACCACTGCTTTTCACATTTGTATTAGCAACTGAGCACACCCGAACACAATGTATAAAAAG
CTCCTTGCAAGACCATGGGACAGCCATTTTGCAAAATGTTACTTCTTTTCTTATTGGGTTAGTCCCCCTT
CTATTTGTGCCTTCGAACCTGACCTTCACACTGTTCAAATGCTTGCTGCTCACTGGGGGTTGCACACTTC
TGCACTGTTTTGTTATTTTACCTGTGTTCCTAACGTTTTTCCCCCCTTCCAAAAAGCACCACAAGAAAAA
GAAACGTGCCAAGCGAAAGGAGAGAGAGGAAATTGAATGCATAGAAATTCAAGAGAACCCGGATCACGTC
ACCACAGTATGA

Translation (843 aa):
MRRPGAPASWIWWRMLRQVLRRGLQSFCHRLGLCVSRHPVFFLTVPAVLTITFGLSALNRFQPEGDLERL
VAPSHSLAKIERSLASSLFPLDQSKSQLYSDLHTPGRYGRVILLSPTGDNILLQAEGILQTHRAVLEMKD
GRNSFIGHQLGGVVEVPNSKDQRVKSARAIQITYYLQTYGSATQDLIGEKWENEFCKLIRKLQEEHQELQ
LYSLASFSLWRDFHKTSILARSKVLVSLVLILTTATLSSSMKDCLRSKPFLGLLGVLTVCISIITAAGIF
FITDGKYNSTLLGIPFFAMGHGTKGVFELLSGWRRTKENLPFKDRIADAYSDVMVTYTMTSSLYFITFGM
GASPFTNIEAVKVFCQNMCVSILLNYFYIFSFFGSCLVFAGQLEQNRYHSIFCCKIPSAEYLDRKPVWFQ
TVMSDGHQQTSHHETNPYQHHFIQHFLREHYNEWITNIYVKPFVVILYLIYASFSFMGCLQISDGANIIN
LLASDSPSVSYAMVQQKYFSNYSPVIGFYVYEPLEYWNSSVQDDLRRLCSGFTAVSWVEQYYQFLKVSNV
SANNKSDFISVLQSSFLKKPEFQHFRNDIIFSKAGDESNIIASRLYLVARTSRDKQKEITEVLEKLRPLS
LSKSIRFIVFNPSFVFMDHYSLSVTVPVLIAGFGVLLVLILTFFLVIHPLGNFWLILSVTSIELGVLGLM
TLWNVDMDCISILCLIYTLNFAIDHCAPLLFTFVLATEHTRTQCIKSSLQDHGTAILQNVTSFLIGLVPL
LFVPSNLTFTLFKCLLLTGGCTLLHCFVILPVFLTFFPPSKKHHKKKKRAKRKEREEIECIEIQENPDHV
TTV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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