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Report for CCDS93924.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93924.1 Public Homo sapiens 6 TRERF1 24 110 108 CCDS HistoryNCBI Gene:55809Re-query CCDS DB by CCDS ID:93924.1Re-query CCDS DB by GeneID:55809See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93924.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000340840.6 ENSP00000339438.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000340840.6Link to Ensembl Protein Viewer:ENSP00000339438.2Re-query CCDS DB by Nucleotide ID:ENST00000340840Re-query CCDS DB by Protein ID:ENSP00000339438
Original member Current member NCBI NM_001391984.1 NP_001378913.1 Accepted alive Link to Nucleotide Sequence:NM_001391984.1Link to Protein Sequence:NP_001378913.1Re-query CCDS DB by Nucleotide ID:NM_001391984Re-query CCDS DB by Protein ID:NP_001378913Link to BLAST:NP_001378913.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001378913.1 1129 Q96PN7-5 1129 100% 0 0

Chromosomal Locations for CCDS 93924.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 42228345 42228669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42232681 42232928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42236205 42236411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42243248 42243361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42246456 42246544 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42254851 42254926 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42256728 42256831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42256963 42257102 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42258135 42258201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42259339 42259723 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42264704 42264854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42265751 42265797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 42268154 42269590 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3390 nt):
ATGGGTGACCAGCAACTGTACAAGACCAACCATGTGGCCCATGGTAGTGAGAACCTTTTCTACCAACAGC
CA
CCACTTGGCGTCCACAGCGGGCTGAACCACAACTATGGGAATGCAGTTACAGGGGGCGGAATGGATGC
C
CCTCAGGCCTCGCCAATCTCCCCCCACTTCCCTCAAGATACACGGGATGGTCTGGGCTTGCCTGTTGGC
TCC
AAAAACCTTGGCCAAATGGATACCTCGAGGCAGGGAGGGTGGGGAAGTCATGCAGGGCCTGGAAACC
AT
GTCCAGCTACGTGGAAACCTGGCCAACTCAAACATGATGTGGGGGGCACCAGCCCAGGCTGAGCCCAC
T
GATGGCTACCAATACACCTACTCCCAGGCCAGCGAGATCCGGACCCAGAAGCTTACCAGCGGTGTCTTA
CAC
AAGCTGGACTCTTTCACCCAGGTGTTTGCCAACCAAAACCTGCGAATTCAGGTCAACAATATGGCCC
AG
GTGCTGCACACTCAGTCAGCAGTGATGGATGGAGCCCCTGACAGTGCTCTCCGCCAGCTGCTGTCTCA
G
AAGCCCATGGAGCCCCCAGCACCGGCTATCCCTTCCCGCTACCAGCAGGTGCCCCAGCAGCCTCACCCT
GGT
TTCACTGGTGGGCTGTCCAAACCAGCTCTTCAGGTCGGGCAGCACCCTACCCAAGGGCACCTGTATT
AT
GACTACCAGCAGCCTCTGGCTCAGGTGCCAGTGCAGGGAGGACAGCCACTGCAGGCCCCACAGATGCT
G
TCACAGCACATGCAACAGATGCAGCAGCACCAGTATTACCCACCGCAGCAACAGCAGCAAGCCGGGCAA
CAG
CGTATCTCCATGCAAGAAATACAGACGCAGCCGCAACAAATTCGCCCATCACAGCCACAGCCGCCGC
CA
CAGCAGCAGCAGCCGCAGCAGCTACAGCTGCAGCAGCGGCAGGGTTCAATGCAGATACCTCAGTATTA
T
CAGCCCCAACCCATGATGCAGCACTTGCAAGAGCAGCAGCAGCAACAGATGCACCTGCAGCCTCCTTCT
TAT
CACAGGGACCCTCACCAGTATACCCCAGAGCAGGCACACACTGTCCAGCTGATTCCCCTGGGCTCCA
TG
TCCCAGTACTACTACCAGGAGCCCCAGCAGCCCTACAGCCACCCCCTCTACCAGCAGAGCCACCTGTC
C
CAGCACCAGCAGCGTGAGGACAGTCAGCTGAAGACCTACTCTAGTGACAGACAGGCCCAGGCCATGCTG
AGC
TCCCATGGGGACCTGGGGCCTCCTGACACAGGAATGGGAGACCCAGCGAGCTCAGATCTGACCCGGG
TC
AGCAGCACCCTCCCCCATCGCCCCCTCCTATCCCCCAGTGGGATCCACCTCAACAACATGGGGCCTCA
G
CATCAGCAGCTGTCTCCCAGTGCCATGTGGCCCCAGATGCACCTACCTGATGGGAGAGCCCAGCCAGGG
TCC
CCTGAGTCAAGTGGCCAACCCAAAGGAGCGTTTGGGGAGCAGTTTGATGCCAAGAACAAGCTGACAT
GC
TCCATCTGCCTGAAGGAGTTCAAGAACCTGCCTGCCCTGAATGGCCACATGCGGTCCCACGGGGGAAT
G
AGGGCCTCCCCCAACCTCAAACAGGAAATCCCCAGGAAGCATCAGCCGAGTGTGCCCAAAGCCGAGGAG
CCC
CTCAAGACCGTGCAGGAGAAGAAAAAGTTCCGGCACCGGCCGGAACCTCTCTTCATCCCGCCGCCGC
CC
TCCTACAACCCGAACCCCGCTGCCTCCTACTCGGGCGCCACCCTGTACCAGAGCCAGCTGCGCTCCCC
G
CGCGTCCTCGGGGACCACCTGCTCCTGGACCCCACCCACGAGCTGCCCCCTTACACGCCCCCACCCATG
CTG
AGCCCGGTGCGCCAGGGCTCGGGGCTCTTCAGCAATGTCCTCATCTCCGGCCACGGCCCTGGCGCCC
AC
CCGCAGCTGCCCCTGACGCCCCTGACGCCCACACCACGGGTGCTGCTGTGTCGCTCCAACAGCATCGA
T
GGCAGCAACGTGACGGTCACCCCAGGGCCTGGAGAGCAGACTGTAGATGTTGAACCACGCATCAACATT
GGC
TTGAGATTCCAAGCAGAAATCCCTGAACTCCAAGATATCTCTGCCCTGGCCCAGGACACACACAAGG
CC
ACACTGGTATGGAAGCCCTGGCCAGAACTAGAAAACCATGACCTCCAGCAAAGAGTGGAGAATCTTCT
G
AATTTGTGCTGTTCCAGTGCATTGCCAGGTGGAGGGACCAATTCTGAATTTGCTTTGCACTCTCTGTTT
GAG
GCCAAAGGTGATGTGATGGTTGCTCTGGAAATGCTGCTACTGCGGAAGCCTGTCAGGTTAAAATGTC
AT
CCTTTAGCAAATTACCACTATGCCGGTTCGGACAAGTGGACCTCCCTAGAAAGAAAACTGTTTAACAA
A
GCACTAGCCACTTACAGCAAAGACTTTATTTTTGTACAGAAGATGGTGAAGTCCAAGACGGTGGCTCAG
TGC
GTGGAGTACTACTACACGTGGAAAAAGATCATGCGGCTGGGGCGGAAACACCGGACACGCCTGGCAG
AA
ATCATCGACGATTGTGTGACAAGTGAAGAAGAAGAAGAGTTAGAGGAGGAGGAGGAGGAGGACCCGGA
A
GAAGATAGGAAATCCACAAAAGAAGAAGAGAGTGAGGTGCCGAAGTCCCCGGAGCCACCACCCGTCCCC
GTC
CTGGCTCCCACGGAGGGGCCGCCCCTGCAGGCCCTGGGCCAGCCCTCAGGCTCCTTCATCTGTGAAA
TG
CCCAACTGTGGGGCTGACTGTAGATGTCATGTCACTCCCTTTCTTCCCCAGGTGTTCAGCTCCCGACA
G
GCACTGAATGGCCATGCCCGCATCCACGGGGGCACCAACCAGGTGACCAAGGCCCGAGGTGCCATCCCC
TCT
GGGAAGCAGAAGCCTGGTGGCACCCAGAGTGGGTACTGTTCGGTAAAGAGCTCACCCTCTCACAGCA
CC
ACCAGCGGCGAGACAGACCCCACCACCATCTTCCCCTGCAAGGAGTGTGGCAAAGTCTTCTTCAAGAT
C
AAAAGCCGAAATGCACACATGAAAACTCACAGGCAGCAGGAGGAACAACAGAGGCAAAAGGCTCAGAAG
GCG
GCTTTTGCAGCTGAGATGGCAGCCACGATTGAGAGGACTACGGGGCCCGTGGGGGCGCCGGGGCTGC
TG
CCCCTGGACCAGCTGAGTCTGATCAAACCCATCAAGGATGTGGACATCCTCGACGACGACGTCGTCCA
G
CAGTTGGGAGGTGTCATGGAAGAGGCTGAAGTTGTGGACACCGATCTTCTCTTGGATGATCAAGATTCA
GTC
TTGCTTCAGGGTGACGCAGAACTATAA


Translation (1129 aa):
MGDQQLYKTNHVAHGSENLFYQQPPLGVHSGLNHNYGNAVTGGGMDAPQASPISPHFPQDTRDGLGLPVG
S
KNLGQMDTSRQGGWGSHAGPGNHVQLRGNLANSNMMWGAPAQAEPTDGYQYTYSQASEIRTQKLTSGVL
H
KLDSFTQVFANQNLRIQVNNMAQVLHTQSAVMDGAPDSALRQLLSQKPMEPPAPAIPSRYQQVPQQPHP
G
FTGGLSKPALQVGQHPTQGHLYYDYQQPLAQVPVQGGQPLQAPQMLSQHMQQMQQHQYYPPQQQQQAGQ
Q
RISMQEIQTQPQQIRPSQPQPPPQQQQPQQLQLQQRQGSMQIPQYYQPQPMMQHLQEQQQQQMHLQPPS
Y
HRDPHQYTPEQAHTVQLIPLGSMSQYYYQEPQQPYSHPLYQQSHLSQHQQREDSQLKTYSSDRQAQAML
S
SHGDLGPPDTGMGDPASSDLTRVSSTLPHRPLLSPSGIHLNNMGPQHQQLSPSAMWPQ
MHLPDGRAQPG
S
PES
SGQPKGAFGEQFDAKNKLTCSICLKEFKNLPALNGHMRSHGGMRASPNLKQEIPRKHQPSVPKAEE
P
LKTVQEKKKFRHRPEPLFIPPPPSYNPNPAASYSGATLYQSQLRSPRVLGDHLLLDPTHELPPYTPPPM
L
SPVRQGSGLFSNVLISGHGPGAHPQLPLTPLTPTPRVLLCRS
NSIDGSNVTVTPGPGEQTVDVEPRINI
G
LRFQAEIPELQDISALAQDTHKATLVWKPWPELENHDLQQR
VENLLNLCCSSALPGGGTNSEFALHSLF
E
AKGDVM
VALEMLLLRKPVRLKCHPLANYHYAGSDKWTSLERKLFNKALATYSKDFIFVQKMVKSKTVAQ
C
VEYYYTWKKIMRLGRKHRTRLAEIIDDCV
TSEEEEELEEEEEEDPEEDRKSTKEEESEVPKSPEPPPVP
V
LAPTEGPPLQALGQPSGSFICEMPNCGA
DCRCHVTPFLPQVFSSRQALNGHARIHGGTNQVTKARGAIP
S
GKQKPGGTQSGYCSVKSSPSHSTTSGETDPTTIFPCKECG
KVFFKIKSRNAHMKTHRQQEEQQRQKAQK
A
AFAAEMAATIERTTGPVGAPGLLPLDQLSLIKPIKDVDILDDDVVQQLGGVMEEAEVVDTDLLLDDQDS
V
LLQGDAEL




Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser