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Report for CCDS93835.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93835.1 Public Homo sapiens 5 MSANTD5 24 110 108 CCDS HistoryNCBI Gene:102724657Re-query CCDS DB by CCDS ID:93835.1Re-query CCDS DB by GeneID:102724657See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93835.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000648368.2 ENSP00000497547.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000648368.2Link to Ensembl Protein Viewer:ENSP00000497547.1Re-query CCDS DB by Nucleotide ID:ENST00000648368Re-query CCDS DB by Protein ID:ENSP00000497547
Original member Current member NCBI NM_001395436.2 NP_001382365.1 Accepted alive Link to Nucleotide Sequence:NM_001395436.2Link to Protein Sequence:NP_001382365.1Re-query CCDS DB by Nucleotide ID:NM_001395436Re-query CCDS DB by Protein ID:NP_001382365Link to BLAST:NP_001382365.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001382365.1 213 A0A3B3IT52 213 100% 0 0

Chromosomal Locations for CCDS 93835.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 178694709 178694947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 178695287 178695598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 178696097 178696181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 178697586 178697591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (642 nt):
ATGGAGATAGTAATACTTCCCACTGAAACTACCATAAACATCCAGAAAATGGAGCAGGAAAACACAGCCC
AGGGATCAGAAAAGCCCTCAGTCCAGTCAGTTAAACCTTGGAGTGACCAGGAAATCCGGAGTTTCCTGCA
AGAATGGGAATTTCTTGAACGTGAGGTGTACAGGGTGAAGAAGAAGTATCACATAGTATCAAAAGCAATT
GCTCAGCGTCTCAAGCAGAGGGGTATCAACAAGAGCTGGAAGGAATGTCTCCAGATGCTAATAAGCTTGC
AGGACTTATACTTCACTATTCAGGAGGCCAACCAGAGGCCAAGGTGCCAACCCTTGCCATGTCCTTATGG
TGAGGCCCTGCACAGGATTCTGGGGTACAGATGGAAGATCAGCGTCTTCTCAGGTCCTCCCTGTGCAGAT
GTGGTTAACCTCGCACCTCCCGAGCACCCGCCCCAGGCCTATGGCGTTCCCATAGTCTTTCAGGAGCCGA
TGTGGGCCCCAACACCTGTGATCTATGTGGAAAATCCTCAGGTACCCGGATGGGAGCCCTGGAACATGAA
TGGTCATGTTCCATATATGTATCCTGCTTTGCCTCCGGCAGCCCCAGGCCCCCTGACACAGTGGGCCATC
TCTACTGACTGA

Translation (213 aa):
MEIVILPTETTINIQKMEQENTAQGSEKPSVQSVKPWSDQEIRSFLQEWEFLEREVYRVKKKYHIVSKAI
AQRLKQRGINKSWKECLQMLISLQDLYFTIQEANQRPRCQPLPCPYGEALHRILGYRWKISVFSGPPCAD
VVNLAPPEHPPQAYGVPIVFQEPMWAPTPVIYVENPQVPGWEPWNMNGHVPYMYPALPPAAPGPLTQWAI
STD


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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