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Report for CCDS93570.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93570.1 Public Homo sapiens 4 LARP7 24 110 108 CCDS HistoryNCBI Gene:51574Re-query CCDS DB by CCDS ID:93570.1Re-query CCDS DB by GeneID:51574See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93570.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000694891.1 ENSP00000511571.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000694891.1Link to Ensembl Protein Viewer:ENSP00000511571.1Re-query CCDS DB by Nucleotide ID:ENST00000694891Re-query CCDS DB by Protein ID:ENSP00000511571
Original member Current member EBI ENST00000694899.1 ENSP00000511577.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000694899.1Link to Ensembl Protein Viewer:ENSP00000511577.1Re-query CCDS DB by Nucleotide ID:ENST00000694899Re-query CCDS DB by Protein ID:ENSP00000511577
Original member Current member NCBI NM_001370979.1 NP_001357908.1 Accepted alive Link to Nucleotide Sequence:NM_001370979.1Link to Protein Sequence:NP_001357908.1Re-query CCDS DB by Nucleotide ID:NM_001370979Re-query CCDS DB by Protein ID:NP_001357908Link to BLAST:NP_001357908.1
Original member Current member NCBI NM_001370980.1 NP_001357909.1 Accepted alive Link to Nucleotide Sequence:NM_001370980.1Link to Protein Sequence:NP_001357909.1Re-query CCDS DB by Nucleotide ID:NM_001370980Re-query CCDS DB by Protein ID:NP_001357909Link to BLAST:NP_001357909.1

Chromosomal Locations for CCDS 93570.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 112644670 112644871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112646351 112646451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112646588 112646671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112646791 112646955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112647034 112647127 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112647202 112647549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112647690 112647834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112649535 112649686 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112650461 112650582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112653077 112653236 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112654068 112654159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 112657247 112657327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1746 nt):
ATGGAAACTGAAAGTGGAAATCAGGAAAAGGTAATGGAAGAAGAAAGCACTGAAAAGAAAAAAGAAGTTG
AAAAAAAGAAACGGTCACGAGTTAAACAGGTGCTTGCAGATATTGCTAAGCAAGTGGACTTCTGGTTTGG
GGATGCAAATCTTCACAAGGATAGATTTCTTCGAGAACAGATAGAAAAATCTAGAGATGGATATGTTGAT
ATATCACTACTTGTGTCTTTTAACAAAATGAAAAAATTGACTACTGATGGGAAGTTAATTGCCAGAGCAT
TGAGAAGTTCAGCTGTTGTAGAGCTTGATTTGGAAGGCACCAGAATCCGGAGGAAAAAACCTCTGGGGGA
AAGACCAAAGGATGAGGATGAACGCACAGTGTATGTGGAGTTACTTCCCAAAAATGTTAATCACAGCTGG
ATTGAAAGAGTATTTGGGAAATGTGGCAATGTTGTTTATATAAGTATACCACATTATAAGTCTACTGGAG
ATCCAAAGGGATTTGCGTTTGTGGAATTTGAAACAAAAGAACAAGCAGCAAAAGCAATTGAGTTTCTTAA
CAACCCACCAGAAGAAGCACCAAGAAAACCTGGCATATTTCCTAAAACAGTGAAAAATAAGCCCATTCCA
GCCTTAAGAGTTGTGGAGAAGAAAAAGAAAAAGAAGAAGAAAGGCCGAATGAAAAAGGAAGACAATATCC
AAGCCAAAGAAGAAAACATGGACACAAGCAACACCAGCATCAGTAAAATGAAAAGATCCAGACCCACATC
TGAGGGCTCTGACATTGAGTCCACTGAACCCCAAAAGCAGTGCTCAAAGAAAAAGAAAAAACGGGACAGA
GTTGAAGCATCTAGCTTACCTGAAGTCAGAACAGGGAAGAGGAAGAGAAGCAGCTCTGAAGATGCAGAAT
CCCTAGCTCCCCGATCAAAAGTAAAGAAAATTATTCAGAAAGACATCATTAAGGAAGCATCAGAAGCTTC
CAAGGAAAATAGAGATATAGAAATCTCTACTGAAGAGGAAAAGGATACTGGAGATCTAAAAGATAGCTCT
CTCTTGAAAACAAAAAGGAAACATAAGAAAAAACATAAAGAGAGACATAAAATGGGAGAAGAAGTTATAC
CATTAAGAGTGCTATCAAAGAGCGAATGGATGGATTTGAAAAAAGAGTATTTAGCGCTACAAAAAGCTAG
CATGGCTTCTTTAAAAAAAACAATATCCCAAATAAAATCAGAGTCAGAAATGGAAACAGACAGTGGAGTA
CCTCAAAACACTGGAATGAAAAATGAAAAAACAGCCAACAGGGAAGAGTGTCGCACCCAGGAGAAAGTTA
ATGCAACAGGACCACAGTTCGTGAGTGGAGTGATTGTGAAGATCATTAGCACAGAGCCTCTACCTGGCAG
GAAACAAGTCCGGGATACTTTGGCAGCAATCTCAGAAGTTCTTTATGTTGATTTGCTAGAAGGGGATACA
GAATGCCATGCTAGATTTAAAACTCCTGAGGATGCTCAAGCAGTAATAAATGCCTATACAGAAATTAACA
AGAAACACTGCTGGAAACTCGAGATCCTTTCTGGTGATCACGAACAAAGGTATTGGCAGAAGATTTTGGT
TGATAGACAGGCAAAACTTAATCAGCCTCGGGAAAAGAAAAGAGGCACTGAAAAGTTAATCACCAAAGCT
GAAAAGATTAGACTGGCAAAGACTCAACAAGCGAGTAAACATATAAGATTTTCTGAATATGATTGA

Translation (581 aa):
METESGNQEKVMEEESTEKKKEVEKKKRSRVKQVLADIAKQVDFWFGDANLHKDRFLREQIEKSRDGYVD
ISLLVSFNKMKKLTTDGKLIARALRSSAVVELDLEGTRIRRKKPLGERPKDEDERTVYVELLPKNVNHSW
IERVFGKCGNVVYISIPHYKSTGDPKGFAFVEFETKEQAAKAIEFLNNPPEEAPRKPGIFPKTVKNKPIP
ALRVVEKKKKKKKKGRMKKEDNIQAKEENMDTSNTSISKMKRSRPTSEGSDIESTEPQKQCSKKKKKRDR
VEASSLPEVRTGKRKRSSSEDAESLAPRSKVKKIIQKDIIKEASEASKENRDIEISTEEEKDTGDLKDSS
LLKTKRKHKKKHKERHKMGEEVIPLRVLSKSEWMDLKKEYLALQKASMASLKKTISQIKSESEMETDSGV
PQNTGMKNEKTANREECRTQEKVNATGPQFVSGVIVKIISTEPLPGRKQVRDTLAAISEVLYVDLLEGDT
ECHARFKTPEDAQAVINAYTEINKKHCWKLEILSGDHEQRYWQKILVDRQAKLNQPREKKRGTEKLITKA
EKIRLAKTQQASKHIRFSEYD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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