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Report for CCDS93487.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93487.1 Public Homo sapiens 4 SEPSECS 24 110 108 CCDS HistoryNCBI Gene:51091Re-query CCDS DB by CCDS ID:93487.1Re-query CCDS DB by GeneID:51091See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93487.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000681948.1 ENSP00000505991.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000681948.1Link to Ensembl Protein Viewer:ENSP00000505991.1Re-query CCDS DB by Nucleotide ID:ENST00000681948Re-query CCDS DB by Protein ID:ENSP00000505991
Current member NCBI NM_001410714.1 NP_001397643.1 Accepted alive Link to Nucleotide Sequence:NM_001410714.1Link to Protein Sequence:NP_001397643.1Re-query CCDS DB by Nucleotide ID:NM_001410714Re-query CCDS DB by Protein ID:NP_001397643Link to BLAST:NP_001397643.1

Chromosomal Locations for CCDS 93487.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 4 (NC_000004.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 25123931 25124225 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25125694 25125784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25127264 25127357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25144774 25144865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25145004 25145133 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25151960 25152062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25154998 25155151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25156037 25156195 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25156856 25156974 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25158953 25159107 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25159510 25159764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 25160256 25160369 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1761 nt):
ATGAACCGCGAGAGCTTCGCGGCGGGAGAGCGGCTGGTGTCGCCGGCTTACGTGCGGCAGGGCTGTGAGG
CCCGCCGCTCGCATGAGCACCTCATACGGCTGCTTCTGGAGAAGAGTCTCGCTCTTTCGCCCAGGCTGGA
ATGCAGTGTGACGATCTCGGCTCACTGCAGCCTCCGCCTCCCGGGTTCACGCCATTCGCCTGCCTCAGCC
TCCCGAGTAGCTGGGACTACAGGCGCCCGCCACCACACCCGGTTAATGTTTGTATTTTTAGTAGAGATGG
GGTTTCACCATGTTGGCCAGGCTGATCTCAAACTCCTGACTTCAAGTGATCGGCCATTCTTGGCCTTCCA
AAGTGCTCGGATTACAGGCGGCAAGTGTCCAGAGAATGGCTGGGATGAAAGTACACTTGAACTCTTTTTA
CATGAACTTGCAATCATGGACAGCAACAATTTCTTAGGCAATTGTGGTGTGGGAGAAAGGGAAGGGAGAG
TGGCATCCGCACTGGTTGCTCGTCGTCATTACAGGTTCATTCATGGCATTGGACGATCCGGTGATATTTC
TGCTGTGCAACCAAAAGCTGCAGGCTCTAGCCTTTTGAACAAAATTACCAATTCTTTGGTCCTGGACATT
ATAAAGCTGGCTGGTGTCCATACAGTAGCCAACTGCTTTGTAGTTCCTATGGCAACTGGTATGAGTCTAA
CTCTGTGTTTCTTAACATTACGACACAAAAGACCAAAGGCAAAGTATATTATATGGCCACGAATAGACCA
GAAGTCCTGCTTTAAATCCATGATCACTGCAGGTTTTGAGCCTGTGGTGATAGAAAATGTTTTGGAAGGT
GACGAGCTGCGTACAGACCTGAAAGCAGTGGAGGCTAAAGTCCAGGAACTTGGGCCTGATTGCATTCTGT
GTATTCATTCTACTACATCCTGTTTTGCTCCAAGGGTGCCTGATAGATTAGAAGAACTGGCTGTGATTTG
TGCTAATTATGACATTCCACATATAGTTAATAATGCTTATGGAGTGCAGTCTTCAAAGTGTATGCATCTC
ATTCAGCAGGGGGCTCGAGTTGGTAGAATAGATGCTTTTGTTCAGAGCTTGGACAAAAATTTTATGGTTC
CAGTAGGTGGTGCTATAATTGCTGGCTTTAATGATTCATTCATTCAGGAAATCAGCAAGATGTATCCAGG
AAGAGCTTCAGCTTCACCTTCTTTAGATGTCCTTATTACTTTATTGTCACTTGGATCAAATGGCTATAAG
AAGCTACTAAAAGAAAGAAAGGAAATGTTTTCATATTTGTCCAACCAAATAAAGAAGTTGTCAGAAGCCT
ACAATGAAAGACTGTTGCATACACCTCACAATCCCATATCTTTAGCTATGACACTTAAAACACTAGATGA
ACACCGTGACAAAGCTGTCACTCAGCTTGGCTCGATGCTTTTTACCAGACAGGTTTCTGGAGCCAGGGTT
GTGCCTCTTGGGTCCATGCAAACTGTGAGTGGCTATACTTTCAGAGGCTTTATGTCACATACAAATAATT
ACCCTTGTGCTTACCTCAATGCTGCATCAGCCATCGGAATGAAGATGCAGGATGTGGACCTGTTCATAAA
GAGACTTGACAGGTGTTTAAAGGCAGTAAGAAAAGAACGAAGTAAAGAGAGTGATGACAATTATGACAAA
ACTGAAGATGTGGATATTGAAGAAATGGCTTTAAAACTAGATAATGTACTTCTTGACACATACCAGGATG
CTTCTTCATGA

Translation (586 aa):
MNRESFAAGERLVSPAYVRQGCEARRSHEHLIRLLLEKSLALSPRLECSVTISAHCSLRLPGSRHSPASA
SRVAGTTGARHHTRLMFVFLVEMGFHHVGQADLKLLTSSDRPFLAFQSARITGGKCPENGWDESTLELFL
HELAIMDSNNFLGNCGVGEREGRVASALVARRHYRFIHGIGRSGDISAVQPKAAGSSLLNKITNSLVLDI
IKLAGVHTVANCFVVPMATGMSLTLCFLTLRHKRPKAKYIIWPRIDQKSCFKSMITAGFEPVVIENVLEG
DELRTDLKAVEAKVQELGPDCILCIHSTTSCFAPRVPDRLEELAVICANYDIPHIVNNAYGVQSSKCMHL
IQQGARVGRIDAFVQSLDKNFMVPVGGAIIAGFNDSFIQEISKMYPGRASASPSLDVLITLLSLGSNGYK
KLLKERKEMFSYLSNQIKKLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARV
VPLGSMQTVSGYTFRGFMSHTNNYPCAYLNAASAIGMKMQDVDLFIKRLDRCLKAVRKERSKESDDNYDK
TEDVDIEEMALKLDNVLLDTYQDASS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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