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Report for CCDS9345.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9345.2 Public Homo sapiens 13 N4BP2L1 24 110 108 CCDS HistoryNCBI Gene:90634Re-query CCDS DB by CCDS ID:9345.2Re-query CCDS DB by GeneID:90634See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 9345.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000380130.7 ENSP00000369473.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000380130.7Link to Ensembl Protein Viewer:ENSP00000369473.2Re-query CCDS DB by Nucleotide ID:ENST00000380130Re-query CCDS DB by Protein ID:ENSP00000369473
Original member Current member EBI ENST00000380133.6 ENSP00000369476.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000380133.6Link to Ensembl Protein Viewer:ENSP00000369476.2Re-query CCDS DB by Nucleotide ID:ENST00000380133Re-query CCDS DB by Protein ID:ENSP00000369476
Original member Current member NCBI NM_001286459.2 NP_001273388.1 Accepted alive Link to Nucleotide Sequence:NM_001286459.2Link to Protein Sequence:NP_001273388.1Re-query CCDS DB by Nucleotide ID:NM_001286459Re-query CCDS DB by Protein ID:NP_001273388Link to BLAST:NP_001273388.1
Original member Current member NCBI NM_052818.3 NP_438169.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_052818.3Link to Protein Sequence:NP_438169.2Re-query CCDS DB by Nucleotide ID:NM_052818Re-query CCDS DB by Protein ID:NP_438169Link to BLAST:NP_438169.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001273388.1 243 Q5TBK1-1 243 100% 0 0
NP_438169.2 243 Q5TBK1-1 243 100% 0 0

Chromosomal Locations for CCDS 9345.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 32402942 32403200 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32404321 32404397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32407250 32407338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32407645 32407772 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 32427904 32428082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (732 nt):
ATGGAGGACAGTTTCCTTCAATCTTTTGGGAGGCTGAGCCTCCAGCCCCAGCAGCAGCAGCAGCGGCAGC
GGCCGCCCCGGCCGCCCCCGCGGGGGACACCTCCTCGCCGCCACAGCTTTAGGAAACACCTCTACCTCCT
GCGAGGCCTCCCGGGCTCCGGGAAAACTACACTGGCCAGACAATTGCAGCATGACTTTCCCAGGGCCCTG
ATTTTCAGCACGGATGATTTTTTCTTCAGGGAAGATGGTGCCTATGAGTTCAATCCTGACTTCCTGGAGG
AAGCTCATGAATGGAACCAAAAAAGAGCAAGAAAAGCAATGAGGAATGGCATATCCCCCATTATTATTGA
TAATACCAACCTCCACGCCTGGGAAATGAAGCCCTATGCAGTCATGGCACTTGAAAATAACTATGAAGTT
ATATTCCGAGAACCTGACACTCGCTGGAAATTCAACGTTCAAGAGTTAGCAAGAAGAAACATTCATGGTG
TCTCAAGAGAAAAAATCCACCGAATGAAAGAACGGTATGAACACGATGTTACTTTTCACAGTGTGCTTCA
TGCAGAAAAGCCAAGCAGAATGAACAGAAACCAGGACAGGAATAATGCATTGCCTTCCAACAATGCCAGA
TACTGGAATTCCTACACAGAGTTTCCAAACCGGAGGGCCCACGGTGGATTTACAAATGAGAGCTCCTATC
ACAGAAGGGGCGGTTGTCACCATGGATATTAG

Translation (243 aa):
MEDSFLQSFGRLSLQPQQQQQRQRPPRPPPRGTPPRRHSFRKHLYLLRGLPGSGKTTLARQLQHDFPRAL
IFSTDDFFFREDGAYEFNPDFLEEAHEWNQKRARKAMRNGISPIIIDNTNLHAWEMKPYAVMALENNYEV
IFREPDTRWKFNVQELARRNIHGVSREKIHRMKERYEHDVTFHSVLHAEKPSRMNRNQDRNNALPSNNAR
YWNSYTEFPNRRAHGGFTNESSYHRRGGCHHGY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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