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Report for CCDS93439.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93439.1 Public Homo sapiens 3 XXYLT1 24 110 108 CCDS HistoryNCBI Gene:152002Re-query CCDS DB by CCDS ID:93439.1Re-query CCDS DB by GeneID:152002See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93439.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000437101.5 ENSP00000409865.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000437101.5Link to Ensembl Protein Viewer:ENSP00000409865.1Re-query CCDS DB by Nucleotide ID:ENST00000437101Re-query CCDS DB by Protein ID:ENSP00000409865
Current member NCBI NM_001410854.1 NP_001397783.1 Accepted alive Link to Nucleotide Sequence:NM_001410854.1Link to Protein Sequence:NP_001397783.1Re-query CCDS DB by Nucleotide ID:NM_001410854Re-query CCDS DB by Protein ID:NP_001397783Link to BLAST:NP_001397783.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001397783.1 190 Q8NBI6-2 190 100% 0 0

Chromosomal Locations for CCDS 93439.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 195069715 195070111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 195156449 195156581 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 195175631 195175673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (573 nt):
ATGTGGCCACCTCGCTGCAAGGATCCAGGAAGGCAGAGTGCGGAGATCCTGCAGATCATTCAGCTGGACC
TAGACCTGAAGTTTAAGACCAACATCCGGGAGTTGTTTGAGGAATTTGACAGTTTCCTGCCAGGCGCCAT
CATCGGCATAGCCCGGGAGATGCAGCCAGTTTACAGGCACACATTCTGGCAGTTCCGCCATGAGAACCCC
CAGACCCGGGTTGGGGGCCCGCCCCCCGAGGGGCTGCCGGGCTTCAACAGCGGGGTGATGTTGCTGAACC
TGGAGGCCATGCGCCAGTCCCCGCTCTACAGCCGCCTGCTGGAGCCGGCGCAGGTGCAGCAGCTGGCCGA
CAAGTACCACTTCCGCGGCCACCTCGGGGACCAGGACTTCTTCACCATGATCGGCATGGAGCACCCCAAG
CTCTTCCATGTGCTGGACTGTACCTGGAACCGGCAGCTGTGCACCTGGTGGAGGGACCATGGCTACAGTG
ACGTCTTCGAGGCCTATTTCAGGTGTGAGGGCCACGTCAAGATCTACCACGGGAACTGCAACACTCCCAT
CCCGGAGGACTAG

Translation (190 aa):
MWPPRCKDPGRQSAEILQIIQLDLDLKFKTNIRELFEEFDSFLPGAIIGIAREMQPVYRHTFWQFRHENP
QTRVGGPPPEGLPGFNSGVMLLNLEAMRQSPLYSRLLEPAQVQQLADKYHFRGHLGDQDFFTMIGMEHPK
LFHVLDCTWNRQLCTWWRDHGYSDVFEAYFRCEGHVKIYHGNCNTPIPED


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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