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Report for CCDS9335.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9335.1 Public Homo sapiens 13 HMGB1 24 110 108 CCDS HistoryNCBI Gene:3146Re-query CCDS DB by CCDS ID:9335.1Re-query CCDS DB by GeneID:3146See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9335.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000339872.8 ENSP00000343040.4 Accepted alive Link to Ensembl Transcript Viewer:ENST00000339872.8Link to Ensembl Protein Viewer:ENSP00000343040.4Re-query CCDS DB by Nucleotide ID:ENST00000339872Re-query CCDS DB by Protein ID:ENSP00000343040
Original member Current member EBI ENST00000341423.10 ENSP00000345347.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000341423.10Link to Ensembl Protein Viewer:ENSP00000345347.5Re-query CCDS DB by Nucleotide ID:ENST00000341423Re-query CCDS DB by Protein ID:ENSP00000345347
Original member Current member EBI ENST00000399494.5 ENSP00000382417.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000399494.5Link to Ensembl Protein Viewer:ENSP00000382417.1Re-query CCDS DB by Nucleotide ID:ENST00000399494Re-query CCDS DB by Protein ID:ENSP00000382417
Original member Current member EBI ENST00000405805.5 ENSP00000384678.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000405805.5Link to Ensembl Protein Viewer:ENSP00000384678.1Re-query CCDS DB by Nucleotide ID:ENST00000405805Re-query CCDS DB by Protein ID:ENSP00000384678
Original member Current member NCBI NM_001313892.2 NP_001300821.1 Accepted alive Link to Nucleotide Sequence:NM_001313892.2Link to Protein Sequence:NP_001300821.1Re-query CCDS DB by Nucleotide ID:NM_001313892Re-query CCDS DB by Protein ID:NP_001300821Link to BLAST:NP_001300821.1
Original member Current member NCBI NM_001313893.1 NP_001300822.1 Accepted alive Link to Nucleotide Sequence:NM_001313893.1Link to Protein Sequence:NP_001300822.1Re-query CCDS DB by Nucleotide ID:NM_001313893Re-query CCDS DB by Protein ID:NP_001300822Link to BLAST:NP_001300822.1
Original member Current member NCBI NM_001370340.1 NP_001357269.1 Accepted alive Link to Nucleotide Sequence:NM_001370340.1Link to Protein Sequence:NP_001357269.1Re-query CCDS DB by Nucleotide ID:NM_001370340Re-query CCDS DB by Protein ID:NP_001357269Link to BLAST:NP_001357269.1
Original member Current member NCBI NM_001370341.1 NP_001357270.1 Accepted alive Link to Nucleotide Sequence:NM_001370341.1Link to Protein Sequence:NP_001357270.1Re-query CCDS DB by Nucleotide ID:NM_001370341Re-query CCDS DB by Protein ID:NP_001357270Link to BLAST:NP_001357270.1
Original member Current member NCBI NM_002128.7 NP_002119.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002128.7Link to Protein Sequence:NP_002119.1Re-query CCDS DB by Nucleotide ID:NM_002128Re-query CCDS DB by Protein ID:NP_002119Link to BLAST:NP_002119.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001300821.1 215 P09429 215 100% 0 0
NP_001300822.1 215 P09429 215 100% 0 0
NP_001357269.1 215 P09429 215 100% 0 0
NP_001357270.1 215 P09429 215 100% 0 0
NP_002119.1 215 P09429 215 100% 0 0

Chromosomal Locations for CCDS 9335.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 30461357 30461533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 30462538 30462712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 30463207 30463352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 30463531 30463680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (648 nt):
ATGGGCAAAGGAGATCCTAAGAAGCCGAGAGGCAAAATGTCATCATATGCATTTTTTGTGCAAACTTGTC
GGGAGGAGCATAAGAAGAAGCACCCAGATGCTTCAGTCAACTTCTCAGAGTTTTCTAAGAAGTGCTCAGA
GAGGTGGAAGACCATGTCTGCTAAAGAGAAAGGAAAATTTGAAGATATGGCAAAAGCGGACAAGGCCCGT
TATGAAAGAGAAATGAAAACCTATATCCCTCCCAAAGGGGAGACAAAAAAGAAGTTCAAGGATCCCAATG
CACCCAAGAGGCCTCCTTCGGCCTTCTTCCTCTTCTGCTCTGAGTATCGCCCAAAAATCAAAGGAGAACA
TCCTGGCCTGTCCATTGGTGATGTTGCGAAGAAACTGGGAGAGATGTGGAATAACACTGCTGCAGATGAC
AAGCAGCCTTATGAAAAGAAGGCTGCGAAGCTGAAGGAAAAATATGAAAAGGATATTGCTGCATATCGAG
CTAAAGGAAAGCCTGATGCAGCAAAAAAGGGAGTTGTCAAGGCTGAAAAAAGCAAGAAAAAGAAGGAAGA
GGAGGAAGATGAGGAAGATGAAGAGGATGAGGAGGAGGAGGAAGATGAAGAAGATGAAGATGAAGAAGAA
GATGATGATGATGAATAA

Translation (215 aa):
MGKGDPKKPRGKMSSYAFFVQTCREEHKKKHPDASVNFSEFSKKCSERWKTMSAKEKGKFEDMAKADKAR
YEREMKTYIPPKGETKKKFKDPNAPKRPPSAFFLFCSEYRPKIKGEHPGLSIGDVAKKLGEMWNNTAADD
KQPYEKKAAKLKEKYEKDIAAYRAKGKPDAAKKGVVKAEKSKKKKEEEEDEEDEEDEEEEEDEEDEDEEE
DDDDE


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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