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Report for CCDS93300.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93300.1 Public Homo sapiens 3 SLMAP 24 110 108 CCDS HistoryNCBI Gene:7871Re-query CCDS DB by CCDS ID:93300.1Re-query CCDS DB by GeneID:7871See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93300.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000428312.6 ENSP00000398661.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000428312.6Link to Ensembl Protein Viewer:ENSP00000398661.2Re-query CCDS DB by Nucleotide ID:ENST00000428312Re-query CCDS DB by Protein ID:ENSP00000398661
Original member Current member NCBI NM_001377925.1 NP_001364854.1 Accepted alive Link to Nucleotide Sequence:NM_001377925.1Link to Protein Sequence:NP_001364854.1Re-query CCDS DB by Nucleotide ID:NM_001377925Re-query CCDS DB by Protein ID:NP_001364854Link to BLAST:NP_001364854.1

Chromosomal Locations for CCDS 93300.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 57757652 57757849 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57831383 57831530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57841299 57841371 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57847197 57847233 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57849754 57849816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57857733 57857828 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57858088 57858159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57860699 57860839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57861949 57862086 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57864548 57864716 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57890041 57890100 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57896511 57896591 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57896873 57896932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57909076 57909150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57912381 57912701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57913158 57913275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57916906 57917077 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57922889 57923023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 57925845 57925928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2241 nt):
ATGCCGTCAGCCTTGGCCATCTTCACTTGCCGCCCGAACTCGCACCCGTTTCAGGAGCGTCATGTCTACC
TGGACGAGCCCATCAAAATCGGCCGCTCAGTGGCCCGCTGTCGACCAGCGCAGAATAATGCCACTTTTGA
TTGCAAAGTGCTATCAAGGAACCACGCTCTCGTCTGGTTTGATCACAAGACGGGCAAGTTTTATCTTCAA
GACACTAAAAGTAGTAATGGTACTTTTATAAATAGCCAGAGATTGAGTCGAGGCTCTGAAGAAAGTCCAC
CATGTGAAATTCTTTCCGGTGACATTATCCAGTTTGGAGTAGACGTGACAGAGAATACACGGAAAGTTAC
CCATGGGTGTATTGTTTCCACAATAAAACTTTTTCTACCAGATGGTATGGAAGCCCGGCTCCGCTCAGAT
GTCATCCATGCACCATTACCAAGTCCTGTTGACAAAGTTGCTGCTAACACTCCAAGTATGTACTCTCAGG
AACTATTCCAGCTTTCTCAGTATCTACAGGAGGCCTTACATCGGGAACAAATGTTGGAACAGAAGTTAGC
CACGCTTCAGCGGCTACTAGCCATCACCCAAGAGGCTTCAGATACCAGTTGGCAGGCTTTAATAGATGAA
GATAGACTCTTATCACGGTTAGAAGTTATGGGAAACCAATTACAGGCATGCTCCAAAAATCAAACAGAAG
ATAGTTTACGAAAGGAACTTATAGCATTACAAGAGGATAAACATAACTATGAGACAACAGCCAAAGAGTC
CCTGAGGCGGGTTCTTCAGGAGAAAATTGAAGTGGTTAGAAAACTTTCAGAAGTTGAGCGAAGTCTGAGT
AATACTGAAGATGAATGTACCCATCTGAAAGAAATGAATGAAAGGACTCAGGAAGAATTAAGAGAATTAG
CCAACAAATATAATGGAGCAGTTAATGAGATTAAAGATTTATCTGATAAATTAAAGGTAGCAGAGGGAAA
ACAAGAGGAAATCCAACAGAAGGGACAGGCTGAGAAAAAAGAATTACAACATAAAATAGATGAAATGGAA
GAAAAAGAACAGGAGCTCCAGGCAAAAATAGAAGCTTTGCAAGCTGATAATGATTTCACCAATGAAAGGC
TAACAGCTTTACAAGAGAAGCTGATCGTCGAAGGGCATCTAACCAAAGCGGTAGAAGAAACAAAGCTTTC
AAAAGAAAATCAGACAAGAGCAAAAGAATCTGATTTTTCAGATACTCTGAGTCCAAGCAAGGAAAAAAGC
AGTGACGACACTACAGACGCCCAAATGGATGAGCAAGACCTAAATGAGCCTCTTGCCAAAGTGTCCCTTT
TAAAAGCTCTTTTGGAAGAAGAAAGAAAAGCCTATCGAAATCAAGTTGAGGAATCCACTAAACAAATACA
GGTTCTTCAAGCCCAATTGCAGAGGTTACACATCGATACTGAGAATCTCCGGGAGGAGAAGGACAGTGAA
ATCACAAGTACTAGAGATGAATTGCTTAGTGCCCGAGATGAAATTTTGCTCCTTCATCAAGCAGCAGCAA
AGGTTGCCTCTGAGCGGGACACTGACATTGCTTCTTTACAAGAAGAGCTTAAGAAGGTGAGAGCTGAGCT
TGAGCGGTGGCGGAAAGCAGCGTCTGAATATGAGAAAGAAATCACAAGTCTGCAAAACAGTTTTCAGCTT
AGATGTCAACAGTGTGAGGACCAGCAGAGAGAAGAAGCAACAAGGTTGCAAGGTGAACTAGAGAAGTTGA
GAAAGGAATGGAATGCATTGGAAACCGAATGCCATTCTCTAAAAAGGGAAAATGTTTTGCTATCATCAGA
ACTGCAACGGCAAGAAAAAGAATTGCACAATTCTCAGAAGCAGAGTTTAGAGCTTACCAGTGATCTCAGC
ATCCTTCAAATGTCTAGGAAAGAACTTGAGAATCAAGTGGGATCCTTGAAAGAACAGCATCTTCGGGATT
CAGCTGATTTAAAAACTCTTCTCAGTAAGGCAGAAAACCAAGCAAAGGATGTGCAGAAAGAGTATGAAAA
GACACAGACTGTACTCTCAGAACTGAAGTTGAAGTTTGAAATGACTGAGCAGGAAAAGCAGTCAATCACA
GATGAGCTCAAACAGTGTAAAAACAACCTGAAGCTGCTCCGAGAGAAAGGAAATAATCCTTCCATATTAC
AACCCGTCCCAGCCGTATTCATCGGCCTATTCCTGGCTTTCCTGTTTTGGTGTTTCGGTCCATTGTGGTA
G

Translation (746 aa):
MPSALAIFTCRPNSHPFQERHVYLDEPIKIGRSVARCRPAQNNATFDCKVLSRNHALVWFDHKTGKFYLQ
DTKSSNGTFINSQRLSRGSEESPPCEILSGDIIQFGVDVTENTRKVTHGCIVSTIKLFLPDGMEARLRSD
VIHAPLPSPVDKVAANTPSMYSQELFQLSQYLQEALHREQMLEQKLATLQRLLAITQEASDTSWQALIDE
DRLLSRLEVMGNQLQACSKNQTEDSLRKELIALQEDKHNYETTAKESLRRVLQEKIEVVRKLSEVERSLS
NTEDECTHLKEMNERTQEELRELANKYNGAVNEIKDLSDKLKVAEGKQEEIQQKGQAEKKELQHKIDEME
EKEQELQAKIEALQADNDFTNERLTALQEKLIVEGHLTKAVEETKLSKENQTRAKESDFSDTLSPSKEKS
SDDTTDAQMDEQDLNEPLAKVSLLKALLEEERKAYRNQVEESTKQIQVLQAQLQRLHIDTENLREEKDSE
ITSTRDELLSARDEILLLHQAAAKVASERDTDIASLQEELKKVRAELERWRKAASEYEKEITSLQNSFQL
RCQQCEDQQREEATRLQGELEKLRKEWNALETECHSLKRENVLLSSELQRQEKELHNSQKQSLELTSDLS
ILQMSRKELENQVGSLKEQHLRDSADLKTLLSKAENQAKDVQKEYEKTQTVLSELKLKFEMTEQEKQSIT
DELKQCKNNLKLLREKGNNPSILQPVPAVFIGLFLAFLFWCFGPLW


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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