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Report for CCDS93247.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93247.1 Public Homo sapiens 3 TTC21A 24 110 108 CCDS HistoryNCBI Gene:199223Re-query CCDS DB by CCDS ID:93247.1Re-query CCDS DB by GeneID:199223See the combined annotation on chromosome 3 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93247.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000683103.1 ENSP00000507739.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000683103.1Link to Ensembl Protein Viewer:ENSP00000507739.1Re-query CCDS DB by Nucleotide ID:ENST00000683103Re-query CCDS DB by Protein ID:ENSP00000507739
Original member Current member NCBI NM_001366900.1 NP_001353829.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001366900.1Link to Protein Sequence:NP_001353829.1Re-query CCDS DB by Nucleotide ID:NM_001366900Re-query CCDS DB by Protein ID:NP_001353829Link to BLAST:NP_001353829.1

Chromosomal Locations for CCDS 93247.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 3 (NC_000003.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3See the combined annotation on chromosome 3 in Sequence Viewer

Chromosome Start Stop Links
3 39107838 39107864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39109085 39109214 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39110029 39110139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39110851 39111017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39112458 39112580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39114585 39114742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39118069 39118153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39119922 39120020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39120997 39121189 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39125063 39125160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39125332 39125532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39126261 39126390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39128331 39128488 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39128717 39128932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39129072 39129310 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39130079 39130151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39130248 39130358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39130701 39130839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39130992 39131095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39133052 39133240 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39134218 39134328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39135093 39135174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39136357 39136507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39136899 39137060 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39137195 39137387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39137486 39137710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39138267 39138387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39138556 39138623 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3
3 39138711 39138788 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 3Link to Ensembl Genome Browser on chromosome 3

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3942 nt):
ATGAGCAGCAATGACTCCTCCCTTATGGCTGGGATCATTTACTATAGCCAGGAAAAGTACTTCCACCATG
TGCAGCAGGCTGCAGCTGTGGGCCTGGAAAAATTCAGCAATGACCCTGTGTTGAAGTTCTTTAAAGCCTA
TGGAGTCCTCAAAGAAGAGCACATCCAGGATGCCATCAGTGACCTGGAAAGCATCAGGCATCACCCAGAC
GTGTCCCTGTGCTCCACCATGGCCCTCATTTATGCTCACAAAAGATGTGAAATCATTGACCGAGAAGCAA
TTCAGGAGCTTGAGTACAGCCTGAAGGAAATACGCAAGACAGTCAGTGGGACTGCACTGTACTATGCTGG
CCTTTTCCTCTGGCTCATAGGCCGCCATGACAAGGCCAAAGAGTACATTGACCGCATGCTGAAGATTTCT
AGAGGCTTCAGAGAGGCCTATGTGCTCAGAGGCTGGGTGGACCTGACCTCAGACAAGCCCCACACTGCGA
AGAAAGCCATTGAGTACCTGGAACAAGGAATTCAGGACACCAAAGATGTGCTGGGGCTGATGGGAAAGGC
AATGTACTTCATGATGCAGCAGAACTACTCAGAGGCCCTGGAGGTGGTGAACCAGATCACTGTGACTTCA
GGGAGCTTCCTGCCAGCCCTCGTCCTGAAGATGCAGCTGTTCTTAGCTCGGCAGGACTGGGAGCAGACAG
TAGAAATGGGACACAGAATCCTAGAAAAAGATGAGAGCAATATTGATGCCTGCCAAATTCTAACCGTGCA
TGAGCTTGCAAGAGAAGGAAACATGACCACAGCTACCAATCACGTTAGAAATCTGATTAAGGCACTAGAG
ACAAGGGAACCCGAAAATCCAAGCCTCCATCTTAAAAAAATTATTGTGGTTAGCCGACTGTGTGGGAGTC
ACCAGGTGATTCTAGGGCTAGTGTGTAGTTTCATCGAGCGCACCTTCATGGCCACCCCCTCGTATGTCCA
TGTGGCCACAGAACTGGGCTATCTCTTCATCCTGAAGAACCAAGTGAAAGAGGCCTTGCTGTGGTATTCA
GAAGCCATGAAACTGGACAAGGATGGCATGGCTGGTTTGACAGGGATCATCTTGTGTCATATCTTAGAAG
GCCACCTGGAGGAAGCTGAGTACCGGCTGGAATTCCTGAAGGAGGTGCAGAAGTCCCTTGGGAAGTCTGA
GGTGCTAATTTTCCTCCAAGCCCTCCTGATGTCCAGGAAGCACAAGGGGGAGGAAGAGACCACAGCGCTC
CTGAAGGAGGCAGTGGAGCTTCACTTCTCCAGCATGCAAGGCATCCCTCTTGGCTCTGAGTACTTTGAAA
AGCTGGACCCGTACTTCCTGGTCTGCATTGCTAAGGAGTACTTGCTCTTCTGCCCCAAGCAGCCCAGGTT
ACCAGGCCAGATCGTGTCTCCACTTCTTAAACAAGTCGCCGTGATCTTGAATCCTGTAGTCAAAGCAGCA
CCAGCTCTGATCGACCCCCTGTATTTGATGGCTCAGGTCAGGTATTACTCAGGAGAGCTAGAGAATGCCC
AGAGCATCCTGCAGCGTTGCCTGGAGCTGGACCCCGCCTCCGTGGATGCCCATCTCCTCATGTGTCAGAT
CTACTTGGCTCAGGGCAACTTTGGCATGTGCTTCCACTGCTTAGAGCTGGGTGTCAGCCACAACTTCCAG
GTCCGAGATCACCCCCTCTACCACCTCATCAAGGCCAGGGCCCTCAACAAGGCTGGAGACTATCCAGAGG
CCATAAAGACGCTGAAAATGGTCATCAAATTGCCAGCTCTGAAGAAGGAAGAAGGCAGAAAGTTCCTCAG
GCCCTCTGTGCAGCCTAGCCAGCGGGCATCCATCTTATTGGAACTGGTGGAGGCCCTCCGGCTGAATGGG
GAGCTACATGAGGCCACCAAGGTCATGCAGGACACCATCAATGAGTTCGGTGGCACACCAGAAGAGAACC
GCATCACCATTGCCAACGTGGACTTGGTCCTGAGCAAGGGCAATGTGGACGTGGCGCTGAACATGCTAAG
GAACATCTTGCCCAAGCAGTCCTGCTATATGGAAGCCAGAGAGAAGATGGCCAACATCTACCTGCAGACC
CTCAGAGACAGGCGCCTCTACATCAGATGCTACCGTGAGCTCTGTGAACATCTGCCTGGCCCCCACACCA
GCCTGCTACTGGGCGATGCCTTAATGAGCATTCTGGAGCCCGAGAAGGCCCTGGAGGTCTATGATGAGGC
CTATAGACAGAACCCACATGACGCCTCCCTGGCCAGCAGAATTGGGCACGCTTATGTGAAGGCCCACCAG
TATACTGAGGCAATTGAGTATTATGAGGCTGCCCAGAAGATTAATGGACAGGACTTTCTGTGCTGCGATC
TGGGCAAACTGCTCCTGAAGTTAAAGAAGGTCAATAAAGCAGAAAAAGTTTTGAAGCAGGCACTGGAACA
TGACATTGTCCAAGACATCCCATCCATGATGAATGATGTTAAGTGCCTGCTTTTGCTGGCAAAGGTTTAC
AAGAGCCATAAAAAAGAAGCTGTGATAGAAACTTTGAACAAGGCCTTGGACCTCCAGTCTCGGATACTGA
AGCGAGTTCCACTGGAGCAACCAGAAATGATTCCCTCCCAGAAGCAACTGGCAGCCTCTATCTGCATCCA
ATTTGCAGAGCACTACCTGGCAGAGAAAGAGTATGACAAGGCGGTACAGTCTTATAAGGATGTCTTCTCC
TACTTGCCAACTGACAATAAGGTGATGCTGGAGCTGGCGCAGCTCTACCTGCTCCAGGGGCACCTGGACC
TGTGTGAGCAGCACTGTGCCATCCTCCTGCAGACTGAGCAGAACCATGAGACCGCTTCTGTGTTGATGGC
TGACCTGATGTTTAGAAAACAGAAACATGAAGCGGCCATCAATCTTTACCACCAAGTCTTGGAGAAAGCG
CCAGACAATTTTTTGGTATTGCATAAATTAATCGATCTGCTAAGAAGAAGTGGAAAACTTGAAGACATTC
CTGCCTTCTTTGAATTGGCCAAGAAGGTGTCTAGCCGGGTGCCTTTGGAACCAGGGTTCAATTACTGCAG
AGGTATCTACTGCTGGCACATAGGGCAGCCCAACGAAGCCTTAAAGTTCCTGAACAAGGCACGCAAGGAC
AGCACTTGGGGCCAGAGCGCCATCTACCACATGGTGCAGATCTGTCTGAATCCAGACAACGAGGTTGTGG
GCGGAGAGGCTTTTGAGAACCAGGGAGCTGAGAGCAACTACATGGAGAAGAAGGAGTTGGAGCAGCAGGG
TGTGAGCACCGCCGAGAAACTGCTGCGTGAGTTTTACCCACATTCAGACTCCAGCCAGACCCAGCTGCGG
CTGCTGCAGGGCCTCTGCCGGCTGGCCACCAGGGAGAAGGCTAACATGGAGGCTGCGCTGGGCAGCTTCA
TCCAGATAGCGCAGGCTGAGAAGGACAGCGTCCCTGCCCTGCTGGCCTTGGCACAAGCCTACGTGTTCCT
GAAGCAGATCCCCAAGGCGCGTATGCAGTTGAAGCGCCTGGCCAAGACCCCCTGGGTGCTGAGTGAGGCT
GAGGACCTGGAGAAGAGCTGGCTCCTGCTGGCTGACATTTACTGCCAGGGCAGCAAGTTCGACCTCGCCT
TAGAACTGCTGCGGCGCTGTGTGCAATACAACAAGTCCTGCTACAAGGCCTATGAGTACATGGGCTTCAT
CATGGAGAAGGAGCAGTCCTACAAGGATGCAGTCACCAACTACAAACTGGCCTGGAAGTACAGTCATCAC
GCCAACCCTGCCATTGGCTTCAAACTTGCTTTCAACTACCTGAAGGACAAGAAATTTGTGGAGGCCATTG
AAATCTGCAACGATGTCCTCAGGGAGCACCCCGACTACCCCAAGATCAGGGAGGAAATTTTGGAAAAGGC
CCGAAGGTCCCTGAGGCCCTAG

Translation (1313 aa):
MSSNDSSLMAGIIYYSQEKYFHHVQQAAAVGLEKFSNDPVLKFFKAYGVLKEEHIQDAISDLESIRHHPD
VSLCSTMALIYAHKRCEIIDREAIQELEYSLKEIRKTVSGTALYYAGLFLWLIGRHDKAKEYIDRMLKIS
RGFREAYVLRGWVDLTSDKPHTAKKAIEYLEQGIQDTKDVLGLMGKAMYFMMQQNYSEALEVVNQITVTS
GSFLPALVLKMQLFLARQDWEQTVEMGHRILEKDESNIDACQILTVHELAREGNMTTATNHVRNLIKALE
TREPENPSLHLKKIIVVSRLCGSHQVILGLVCSFIERTFMATPSYVHVATELGYLFILKNQVKEALLWYS
EAMKLDKDGMAGLTGIILCHILEGHLEEAEYRLEFLKEVQKSLGKSEVLIFLQALLMSRKHKGEEETTAL
LKEAVELHFSSMQGIPLGSEYFEKLDPYFLVCIAKEYLLFCPKQPRLPGQIVSPLLKQVAVILNPVVKAA
PALIDPLYLMAQVRYYSGELENAQSILQRCLELDPASVDAHLLMCQIYLAQGNFGMCFHCLELGVSHNFQ
VRDHPLYHLIKARALNKAGDYPEAIKTLKMVIKLPALKKEEGRKFLRPSVQPSQRASILLELVEALRLNG
ELHEATKVMQDTINEFGGTPEENRITIANVDLVLSKGNVDVALNMLRNILPKQSCYMEAREKMANIYLQT
LRDRRLYIRCYRELCEHLPGPHTSLLLGDALMSILEPEKALEVYDEAYRQNPHDASLASRIGHAYVKAHQ
YTEAIEYYEAAQKINGQDFLCCDLGKLLLKLKKVNKAEKVLKQALEHDIVQDIPSMMNDVKCLLLLAKVY
KSHKKEAVIETLNKALDLQSRILKRVPLEQPEMIPSQKQLAASICIQFAEHYLAEKEYDKAVQSYKDVFS
YLPTDNKVMLELAQLYLLQGHLDLCEQHCAILLQTEQNHETASVLMADLMFRKQKHEAAINLYHQVLEKA
PDNFLVLHKLIDLLRRSGKLEDIPAFFELAKKVSSRVPLEPGFNYCRGIYCWHIGQPNEALKFLNKARKD
STWGQSAIYHMVQICLNPDNEVVGGEAFENQGAESNYMEKKELEQQGVSTAEKLLREFYPHSDSSQTQLR
LLQGLCRLATREKANMEAALGSFIQIAQAEKDSVPALLALAQAYVFLKQIPKARMQLKRLAKTPWVLSEA
EDLEKSWLLLADIYCQGSKFDLALELLRRCVQYNKSCYKAYEYMGFIMEKEQSYKDAVTNYKLAWKYSHH
ANPAIGFKLAFNYLKDKKFVEAIEICNDVLREHPDYPKIREEILEKARRSLRP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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