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Report for CCDS9312.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9312.1 Public Homo sapiens 13 AMER2 24 110 108 CCDS HistoryNCBI Gene:219287Re-query CCDS DB by CCDS ID:9312.1Re-query CCDS DB by GeneID:219287See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9312.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000357816.2 ENSP00000350469.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000357816.2Link to Ensembl Protein Viewer:ENSP00000350469.2Re-query CCDS DB by Nucleotide ID:ENST00000357816Re-query CCDS DB by Protein ID:ENSP00000350469
Original member Current member NCBI NM_199138.2 NP_954589.1 Accepted alive Link to Nucleotide Sequence:NM_199138.2Link to Protein Sequence:NP_954589.1Re-query CCDS DB by Nucleotide ID:NM_199138Re-query CCDS DB by Protein ID:NP_954589Link to BLAST:NP_954589.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_954589.1 552 Q8N7J2-2 552 100% 0 0

Chromosomal Locations for CCDS 9312.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 25169604 25170481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 25170839 25171619 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1659 nt):
ATGGAGACGAGCCGGAGCCGCGGCGGCGGCGGGGCTGTCAGCGAGCGCGGCGGAGCTGGCGCGTCCGTGG
GGGTCTGCAGGAGGAAGGCGGAGGCCGGGGCCGGGACCGGGACCCTCGCGGCAGACATGGACTTGCATTG
TGACTGTGCCGCCGAAACGCCGGCCGCCGAGCCGCCGTCGGGGAAGATTAATAAAGCTGCCTTCAAATTA
TTCAAGAAGAGGAAATCGGGTGGCACCATGCCCAGCATTTTTGGGGTCAAAAACAAAGGGGACGGGAAAA
GCTCGGGTCCGACGGGGCTGGTGAGGAGCAGGACCCACGACGGACTTGCCGAGGTGCTGGTGCTGGAGAG
CGGCAGGAAGGAGGAGCCGCGCGGCGGGGGCGACAGCGGCGGGGGCGGCGGGGGGCGGCCGAACCCGGGG
CCCCCCAGAGCCGCAGGGCCCGGCGGGGGCTCCCTCGCCAGCAGCTCGGTGGCCAAGTCGCACAGCTTCT
TCTCGCTGCTGAAGAAGAACGGGCGCTCGGAAAACGGCAAGGGAGAGCCTGTGGACGCGAGCAAGGCCGG
CGGCAAACAAAAGCGGGGGCTGCGGGGGCTGTTCAGCGGCATGCGCTGGCACAGGAAAGACAAGCGGGCC
AAGGCGGAGGCCGCGGAGGGGCGCGCGCCCGGGGGCGGCTTGATCCTACCCGGCTCGCTCACCGCCAGCC
TGGAGTGCGTCAAGGAGGAGACGCCCAGAGCCGCGCGCGAGCCGGAGGAGCCCAGCCAGGACGCCCCGCG
AGACCCAGCAGGCTGTGGAGATATTATTGCAGACCAAGAGGAAGAGGCAGGTCCCAGCTGTGACAAGCAT
GTCCCCGGGCCAGGCAAGCCGGCTCTGTCTAAAAAGAACCCCGGCGTGGTGGCCTACCAAGGAGGCGGGG
AAGAGATGGCCAGCCCGGACGAGGTGGACGACACCTATCTACAGGAGTTCTGGGACATGCTCTCCCAGAC
CGAGGAGCAGGGACCCGAGCCCCAGGAGGGCGCGGCTAAGGTGGCAGCTGCGCTGGAAACCAAGGTGGTG
CCCGAGACCCCCAAAGACACCAGGTGTGTGGAAGCGGCCAAGGACGCGTCCTCGGTCAAGCGCAGGAGGC
TCAACCGGATTCCCATCGAGCCCCATCCTAAGGAGGAGCCCAAGCACCCGGAGAAGGAGCAGCAGGAAGG
CGTCCCCAACAGCGACGAGGGCTACTGGGACTCCACCACGCCAGGCCCAGAGGAAGACAGCTCGAGCAGC
GGGAAGAAGGCGGGCATCCCCCGGGATAGCTACAGCGGGGACGCGCTCTATGATCTCTATGCTGACCCGG
ACGGAAGTCCAGCAACCCTTCCTGGAGGGAAGGACAACGAGGAGACGTCCTCCCTGTCCCGGTTAAAGCC
CGTATCTCCAGGCACCATCACCTGTCCACTGCGAACACCAGGCAGCTTGCTGAAGGACTCTAAGATCCCT
ATTAGCATCAAGCACCTGACCAACCTTCCATCTAGCCATCCCGTGGTGCACCAGCAACCCTCCAGGAGTG
AGATGCCCAGAACAAAAATCCCGGTTTCCAAAGTGCTGGTCCGCAGAGTCAGCAACCGGGGCTTGGCTGG
GACCACCATCAGAGCAACGGCCTGCCACGACAGTGCCAAAAAGTTGTGA

Translation (552 aa):
METSRSRGGGGAVSERGGAGASVGVCRRKAEAGAGTGTLAADMDLHCDCAAETPAAEPPSGKINKAAFKL
FKKRKSGGTMPSIFGVKNKGDGKSSGPTGLVRSRTHDGLAEVLVLESGRKEEPRGGGDSGGGGGGRPNPG
PPRAAGPGGGSLASSSVAKSHSFFSLLKKNGRSENGKGEPVDASKAGGKQKRGLRGLFSGMRWHRKDKRA
KAEAAEGRAPGGGLILPGSLTASLECVKEETPRAAREPEEPSQDAPRDPAGCGDIIADQEEEAGPSCDKH
VPGPGKPALSKKNPGVVAYQGGGEEMASPDEVDDTYLQEFWDMLSQTEEQGPEPQEGAAKVAAALETKVV
PETPKDTRCVEAAKDASSVKRRRLNRIPIEPHPKEEPKHPEKEQQEGVPNSDEGYWDSTTPGPEEDSSSS
GKKAGIPRDSYSGDALYDLYADPDGSPATLPGGKDNEETSSLSRLKPVSPGTITCPLRTPGSLLKDSKIP
ISIKHLTNLPSSHPVVHQQPSRSEMPRTKIPVSKVLVRRVSNRGLAGTTIRATACHDSAKKL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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