NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS93001.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
93001.1 Public Homo sapiens 20 SIRPD 24 110 108 CCDS HistoryNCBI Gene:128646Re-query CCDS DB by CCDS ID:93001.1Re-query CCDS DB by GeneID:128646See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 93001.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000381621.5 ENSP00000371034.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000381621.5Link to Ensembl Protein Viewer:ENSP00000371034.1Re-query CCDS DB by Nucleotide ID:ENST00000381621Re-query CCDS DB by Protein ID:ENSP00000371034
Current member NCBI NM_001410802.1 NP_001397731.1 Accepted alive Link to Nucleotide Sequence:NM_001410802.1Link to Protein Sequence:NP_001397731.1Re-query CCDS DB by Nucleotide ID:NM_001410802Re-query CCDS DB by Protein ID:NP_001397731Link to BLAST:NP_001397731.1

Chromosomal Locations for CCDS 93001.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 1534425 1534441 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1537155 1537313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1551691 1552038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 1557581 1557653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (597 nt):
ATGCCCATCCCTGCCTCCCCACTCCACCCACCTCTGCCTTCCTTACTGCTGTATCTGCTGCTTGAACTGG
CAGGAGTCACACATGTGTTCCATGTGCAACAAACGGAGATGTCACAGACTGTATCAACTGGGGAGTCAAT
CATCTTGAGTTGCAGCGTACCCAATACCTTACCAAATGGACCTGTCTTGTGGTTCAAGGGAACAGGGCCA
AACCGGAAATTAATCTACAATTTCAAACAAGGTAACTTTCCCAGAGTAAAAGAGATTGGAGACACCACCA
AGCCTGGCAACACAGACTTTTCCACCCGCATCCGTGAAATCTCTCTTGCTGATGCTGGCACCTATTACTG
CGTGAAGTTCATAAAAGGAAGAGCTATCAAGGAGTACCAATCAGGTCGGGGCACTCAGGTGTTTGTTACT
GCAGAGCAGAATCCAAGACCTCCCAAGAACAGACCTGCAGGCAGAGCAGGCTCCAGGGCCCACCATGATG
CCCATACCTGCCTCTCGGCCCTGCCTGAGAGAAACAGCACAAACTATTTCGTCCAACCCTGCTGCTGCCT
CCGGCTGCTGGGACTCACAGGCTTGCTGTCAAAATAA

Translation (198 aa):
MPIPASPLHPPLPSLLLYLLLELAGVTHVFHVQQTEMSQTVSTGESIILSCSVPNTLPNGPVLWFKGTGP
NRKLIYNFKQGNFPRVKEIGDTTKPGNTDFSTRIREISLADAGTYYCVKFIKGRAIKEYQSGRGTQVFVT
AEQNPRPPKNRPAGRAGSRAHHDAHTCLSALPERNSTNYFVQPCCCLRLLGLTGLLSK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH