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Report for CCDS9257.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9257.1 Public Homo sapiens 12 ZNF664 24 110 108 CCDS HistoryNCBI Gene:144348Re-query CCDS DB by CCDS ID:9257.1Re-query CCDS DB by GeneID:144348See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9257.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000337815.9 ENSP00000337320.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000337815.9Link to Ensembl Protein Viewer:ENSP00000337320.4Re-query CCDS DB by Nucleotide ID:ENST00000337815Re-query CCDS DB by Protein ID:ENSP00000337320
Original member Current member EBI ENST00000392404.7 ENSP00000376205.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392404.7Link to Ensembl Protein Viewer:ENSP00000376205.3Re-query CCDS DB by Nucleotide ID:ENST00000392404Re-query CCDS DB by Protein ID:ENSP00000376205
Original member Current member EBI ENST00000538932.6 ENSP00000440645.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000538932.6Link to Ensembl Protein Viewer:ENSP00000440645.1Re-query CCDS DB by Nucleotide ID:ENST00000538932Re-query CCDS DB by Protein ID:ENSP00000440645
Original member Current member EBI ENST00000539644.5 ENSP00000441405.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000539644.5Link to Ensembl Protein Viewer:ENSP00000441405.1Re-query CCDS DB by Nucleotide ID:ENST00000539644Re-query CCDS DB by Protein ID:ENSP00000441405
Original member Current member NCBI NM_001204298.2 NP_001191227.1 Accepted alive Link to Nucleotide Sequence:NM_001204298.2Link to Protein Sequence:NP_001191227.1Re-query CCDS DB by Nucleotide ID:NM_001204298Re-query CCDS DB by Protein ID:NP_001191227Link to BLAST:NP_001191227.1
Original member Current member NCBI NM_152437.3 NP_689650.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152437.3Link to Protein Sequence:NP_689650.1Re-query CCDS DB by Nucleotide ID:NM_152437Re-query CCDS DB by Protein ID:NP_689650Link to BLAST:NP_689650.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001191227.1 261 Q8N3J9 261 100% 0 0
NP_689650.1 261 Q8N3J9 261 100% 0 0

Chromosomal Locations for CCDS 9257.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 124012145 124012930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (786 nt):
ATGATCTACAAGTGCCCCATGTGTAGGGAATTTTTCTCTGAGAGAGCAGATCTTTTTATGCATCAGAAAA
TTCACACAGCTGAGAAGCCCCATAAATGTGACAAGTGTGATAAGGGTTTCTTTCATATATCAGAACTTCA
TATTCATTGGAGAGACCATACAGGAGAGAAGGTCTATAAATGTGATGATTGTGGTAAGGATTTTAGCACT
ACAACAAAACTTAATAGACATAAGAAAATCCACACAGTGGAGAAGCCCTATAAATGTTACGAGTGTGGCA
AAGCCTTCAATTGGAGCTCCCATCTTCAAATTCATATGAGAGTTCATACAGGTGAGAAACCGTATGTCTG
TAGTGAGTGTGGAAGGGGCTTTAGTAATAGTTCAAACCTTTGCATGCATCAGAGAGTCCACACCGGAGAG
AAGCCCTTTAAATGTGAAGAGTGTGGGAAGGCCTTCAGGCACACCTCCAGCCTCTGCATGCATCAAAGAG
TCCACACAGGAGAGAAACCCTATAAATGTTATGAGTGTGGGAAGGCGTTCAGTCAGAGTTCGAGCCTCTG
CATCCACCAGAGAGTCCACACTGGAGAGAAACCCTATAGATGTTGTGGATGTGGGAAGGCCTTCAGTCAG
AGTTCGAGCCTGTGCATCCACCAGAGAGTCCACACAGGAGAGAAACCTTTCAAATGTGATGAGTGCGGAA
AGGCCTTCAGTCAGAGTACGAGCCTCTGCATCCACCAGAGAGTCCACACAAAGGAGAGAAACCATCTCAA
AATATCAGTTATATAA

Translation (261 aa):
MIYKCPMCREFFSERADLFMHQKIHTAEKPHKCDKCDKGFFHISELHIHWRDHTGEKVYKCDDCGKDFST
TTKLNRHKKIHTVEKPYKCYECGKAFNWSSHLQIHMRVHTGEKPYVCSECGRGFSNSSNLCMHQRVHTGE
KPFKCEECGKAFRHTSSLCMHQRVHTGEKPYKCYECGKAFSQSSSLCIHQRVHTGEKPYRCCGCGKAFSQ
SSSLCIHQRVHTGEKPFKCDECGKAFSQSTSLCIHQRVHTKERNHLKISVI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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