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Report for CCDS92549.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92549.1 Public Homo sapiens 19 TPM4 24 110 108 CCDS HistoryNCBI Gene:7171Re-query CCDS DB by CCDS ID:92549.1Re-query CCDS DB by GeneID:7171See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 92549.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000586833.7 ENSP00000467087.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000586833.7Link to Ensembl Protein Viewer:ENSP00000467087.3Re-query CCDS DB by Nucleotide ID:ENST00000586833Re-query CCDS DB by Protein ID:ENSP00000467087
Original member Current member NCBI NM_001367838.1 NP_001354767.1 Accepted alive Link to Nucleotide Sequence:NM_001367838.1Link to Protein Sequence:NP_001354767.1Re-query CCDS DB by Nucleotide ID:NM_001367838Re-query CCDS DB by Protein ID:NP_001354767Link to BLAST:NP_001354767.1

Chromosomal Locations for CCDS 92549.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 16080953 16081075 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16081913 16082046 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16086423 16086540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16088027 16088097 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16089045 16089120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16093536 16093598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16093684 16093753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 16101264 16101346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (738 nt):
ATGTCTTCCATGCCTGCAACCAAGTTTTCTTTCCCTTTCCATATCTTTTTGTCCTGCCATCTCTCAGCCA
GGCGGATTGAAGGATGGAATTCCAACGAGGCTCCCCCGCCTCGTCCCACCTTGGCTGAAGGTGATGTGGC
CGCCCTCAACCGACGCATCCAGCTCGTTGAGGAGGAGTTGGACAGGGCTCAGGAACGACTGGCCACGGCC
CTGCAGAAGCTGGAGGAGGCAGAAAAAGCTGCAGATGAGAGTGAGAGAGGAATGAAGGTGATAGAAAACC
GGGCCATGAAGGATGAGGAGAAGATGGAGATTCAGGAGATGCAGCTCAAAGAGGCCAAGCACATTGCGGA
AGAGGCTGACCGCAAATACGAGGAGGTAGCTCGTAAGCTGGTCATCCTGGAGGGTGAGCTGGAGAGGGCA
GAGGAGCGTGCGGAGGTGTCTGAACTAAAATGTGGTGACCTGGAAGAAGAACTCAAGAATGTTACTAACA
ATCTGAAATCTCTGGAGGCTGCATCTGAAAAGTATTCTGAAAAGGAGGACAAATATGAAGAAGAAATTAA
ACTTCTGTCTGACAAACTGAAAGAGGCTGAGACCCGTGCTGAATTTGCAGAGAGAACGGTTGCAAAACTG
GAAAAGACAATTGATGACCTGGAAGAGAAACTTGCCCAGGCCAAAGAAGAGAACGTGGGCTTACATCAGA
CACTGGATCAGACACTAAACGAACTTAACTGTATATAA

Translation (245 aa):
MSSMPATKFSFPFHIFLSCHLSARRIEGWNSNEAPPPRPTLAEGDVAALNRRIQLVEEELDRAQERLATA
LQKLEEAEKAADESERGMKVIENRAMKDEEKMEIQEMQLKEAKHIAEEADRKYEEVARKLVILEGELERA
EERAEVSELKCGDLEEELKNVTNNLKSLEAASEKYSEKEDKYEEEIKLLSDKLKEAETRAEFAERTVAKL
EKTIDDLEEKLAQAKEENVGLHQTLDQTLNELNCI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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