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Report for CCDS9251.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9251.1 Public Homo sapiens 12 DDX55 24 110 108 CCDS HistoryNCBI Gene:57696Re-query CCDS DB by CCDS ID:9251.1Re-query CCDS DB by GeneID:57696See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9251.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000238146.9 ENSP00000238146.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000238146.9Link to Ensembl Protein Viewer:ENSP00000238146.3Re-query CCDS DB by Nucleotide ID:ENST00000238146Re-query CCDS DB by Protein ID:ENSP00000238146
Original member Current member NCBI NM_020936.3 NP_065987.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020936.3Link to Protein Sequence:NP_065987.1Re-query CCDS DB by Nucleotide ID:NM_020936Re-query CCDS DB by Protein ID:NP_065987Link to BLAST:NP_065987.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065987.1 600 Q8NHQ9-1 600 100% 0 0

Chromosomal Locations for CCDS 9251.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 123602149 123602256 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 123605931 123605981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 123606073 123606159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 123607432 123607523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 123607600 123607662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 123608680 123608829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 123609939 123610128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 123613170 123613252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 123615185 123615316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 123616511 123616603 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 123617758 123617872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 123618669 123618837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 123619432 123619724 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 123619964 123620140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1803 nt):
ATGGAGCATGTGACAGAGGGCTCCTGGGAGTCGCTGCCTGTGCCGCTGCACCCGCAGGTGCTGGGCGCGC
TGCGGGAGCTGGGCTTCCCGTACATGACGCCGGTGCAGTCCGCAACCATCCCTCTGTTCATGCGAAACAA
AGATGTCGCTGCAGAAGCGGTCACAGGTAGTGGCAAAACACTCGCTTTTGTCATCCCCATCCTGGAAATT
CTTCTGAGAAGAGAAGAGAAGTTAAAAAAGAGTCAGGTTGGAGCCATAATCATCACCCCCACTCGAGAGC
TGGCCATTCAAATAGACGAGGTCCTGTCGCATTTCACGAAGCACTTCCCCGAGTTCAGCCAGATTCTTTG
GATCGGAGGCAGGAATCCTGGAGAAGATGTTGAGAGGTTTAAGCAACAAGGTGGGAACATCATTGTGGCC
ACTCCAGGCCGCTTGGAGGACATGTTCCGGAGGAAGGCCGAAGGCTTGGATCTGGCCAGCTGTGTGCGAT
CCCTGGATGTCCTGGTGTTGGATGAGGCAGACAGACTTCTGGACATGGGGTTTGAGGCAAGCATCAACAC
CATTCTGGAGTTTTTGCCAAAGCAGAGGAGAACAGGCCTTTTCTCTGCCACTCAGACGCAGGAAGTGGAG
AACCTGGTGAGAGCGGGCCTCCGGAACCCTGTCCGGGTCTCAGTGAAGGAGAAGGGCGTGGCAGCCAGCA
GTGCCCAGAAGACCCCCTCCCGCCTGGAAAACTACTACATGGTATGCAAGGCAGATGAGAAATTTAATCA
GCTGGTCCATTTTCTTCGCAATCATAAGCAGGAGAAACACCTGGTCTTCTTCAGCACCTGTGCCTGTGTG
GAATACTATGGGAAGGCTCTGGAAGTGCTGGTGAAGGGCGTGAAGATTATGTGCATTCACGGAAAGATGA
AATATAAACGCAATAAGATCTTCATGGAGTTCCGCAAATTGCAAAGTGGGATTTTAGTGTGCACTGATGT
GATGGCCCGGGGAATTGATATTCCTGAAGTCAACTGGGTTTTGCAGTATGACCCTCCCAGCAATGCAAGT
GCCTTCGTGCATCGCTGCGGTCGCACAGCTCGCATTGGCCACGGGGGCAGCGCTCTGGTGTTCCTCCTGC
CCATGGAAGAGTCATACATCAATTTCCTTGCAATTAACCAAAAATGCCCCCTGCAGGAGATGAAGCCCCA
GAGAAACACAGCGGACCTTCTGCCAAAACTCAAGTCCATGGCCCTGGCTGACAGAGCTGTGTTTGAAAAG
GGCATGAAAGCTTTTGTGTCATATGTCCAAGCTTATGCAAAGCATGAATGCAACCTGATTTTCAGATTAA
AGGATCTTGATTTTGCCAGCCTTGCTCGAGGTTTTGCCCTGCTGAGGATGCCCAAGATGCCAGAATTGAG
AGGAAAGCAGTTTCCAGATTTTGTGCCCGTGGACGTTAATACCGACACGATTCCATTTAAAGATAAAATC
AGAGAAAAGCAGAGGCAGAAACTCCTGGAGCAACAAAGAAGAGAGAAAACAGAAAATGAAGGGAGAAGAA
AATTCATAAAAAATAAAGCTTGGTCAAAGCAGAAGGCCAAAAAAGAAAAGAAGAAAAAAATGAATGAGAA
AAGGAAAAGGGAAGAGGGTTCTGATATTGAAGATGAGGACATGGAAGAACTTCTTAATGACACAAGACTC
TTGAAAAAACTTAAGAAAGGCAAAATAACTGAAGAAGAATTTGAGAAGGGCTTGTTGACAACTGGCAAAA
GAACAATCAAGACAGTGGATTTAGGGATCTCAGATTTGGAAGATGACTGCTGA

Translation (600 aa):
MEHVTEGSWESLPVPLHPQVLGALRELGFPYMTPVQSATIPLFMRNKDVAAEAVTGSGKTLAFVIPILEI
LLRREEKLKKSQVGAIIITPTRELAIQIDEVLSHFTKHFPEFSQILWIGGRNPGEDVERFKQQGGNIIVA
TPGRLEDMFRRKAEGLDLASCVRSLDVLVLDEADRLLDMGFEASINTILEFLPKQRRTGLFSATQTQEVE
NLVRAGLRNPVRVSVKEKGVAASSAQKTPSRLENYYMVCKADEKFNQLVHFLRNHKQEKHLVFFSTCACV
EYYGKALEVLVKGVKIMCIHGKMKYKRNKIFMEFRKLQSGILVCTDVMARGIDIPEVNWVLQYDPPSNAS
AFVHRCGRTARIGHGGSALVFLLPMEESYINFLAINQKCPLQEMKPQRNTADLLPKLKSMALADRAVFEK
GMKAFVSYVQAYAKHECNLIFRLKDLDFASLARGFALLRMPKMPELRGKQFPDFVPVDVNTDTIPFKDKI
REKQRQKLLEQQRREKTENEGRRKFIKNKAWSKQKAKKEKKKKMNEKRKREEGSDIEDEDMEELLNDTRL
LKKLKKGKITEEEFEKGLLTTGKRTIKTVDLGISDLEDDC


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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