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Report for CCDS92478.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92478.1 Public Homo sapiens 19 MIDN 24 110 108 CCDS HistoryNCBI Gene:90007Re-query CCDS DB by CCDS ID:92478.1Re-query CCDS DB by GeneID:90007See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 92478.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000682408.1 ENSP00000507955.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000682408.1Link to Ensembl Protein Viewer:ENSP00000507955.1Re-query CCDS DB by Nucleotide ID:ENST00000682408Re-query CCDS DB by Protein ID:ENSP00000507955
Original member Current member NCBI NM_001388306.1 NP_001375235.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001388306.1Link to Protein Sequence:NP_001375235.1Re-query CCDS DB by Nucleotide ID:NM_001388306Re-query CCDS DB by Protein ID:NP_001375235Link to BLAST:NP_001375235.1

Chromosomal Locations for CCDS 92478.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 1250297 1250529 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1251562 1251649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1251839 1251901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1253954 1254082 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1254167 1254478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1254902 1255061 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1255422 1255694 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 1256995 1257272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1536 nt):
ATGGAGCCGCAGCCCGGCGGCGCCCGGAGCTGCCGGCGCGGGGCCCCCGGCGGCGCCTGCGAGCTGGGCC
CGGCGGCCGAGGCGGCGCCCATGAGCCTCGCCATCCACAGCACCACGGGCACCCGCTACGACCTGGCCGT
GCCGCCCGACGAGACGGTGGAGGGGCTGCGCAAGCGGTTGTCCCAGCGCCTCAAAGTGCCCAAGGAGCGC
CTGGCTCTTCTCCACAAAGACACCCGGCTCAGTTCGGGGAAGCTGCAGGAGTTCGGCGTGGGTGATGGCA
GCAAGCTGACCTTGGTACCCACCGTGGAAGCGGGCCTCATGTCTCAGGCCTCAAGGCCGGAACAGTCCGT
GATGCAAGCTCTCGAGAGTCTCACGGAGACGCAGCCCCCAGCGGCGCCCGGGCCGGGCCGGGCTGGCGGA
GGAGGCTTCCGGAAATACAGATTCATTTTATTTAAGCGTCCGTGGCACCGACAGGGACCCCAGAGCCCAG
AGAGGGGCGGCGAGAGGCCCCAGGTCAGTGACTTCCTGTCGGGCCGTTCGCCACTGACACTGGCCTTGCG
TGTGGGCGACCACATGATGTTCGTGCAGCTGCAGCTCGCGGCCCAGCACGCTCCACTGCAACACCGCCAT
GTGCTGGCCGCTGCGGCCGCCGCCGCTGCTGCGCGGGGGGACCCCAGCATAGCCTCCCCCGTGTCCTCGC
CCTGCCGGCCGGTGTCCAGTGCCGCCCGAGTCCCCCCGGTGCCCACCAGCCCGTCCCCTGCATCTCCCTC
GCCCATCACAGCCGGCTCCTTCCGGTCCCACGCAGCCTCCACCACCTGCCCGGAGCAGATGGACTGCTCC
CCCACGGCCAGCAGCAGTGCCAGTCCTGGTGCCAGCACCACGTCTACCCCAGGGGCCAGCCCTGCCCCCC
GCTCCCGAAAACCCGGCGCCGTCATCGAGAGCTTTGTGAATCACGCCCCGGGGGTCTTCTCAGGGACCTT
CTCTGGCACGCTACACCCCAACTGCCAAGACAGCAGCGGGCGGCCGCGGCGTGACATCGGCACCATCCTG
CAGATCCTGAACGACCTCCTGAGCGCCACCCGGCACTACCAGGGCATGCCCCCTTCGCTGGCCCAGCTCC
GCTGCCACGCCCAGTGCTCCCCGGCCTCACCGGCCCCCGACCTGGCCCCCAGAACTACCTCCTGCGAGAA
GCTCACGGCTGCCCCCTCAGCCTCCCTGCTGCAGGGCCAGAGCCAGATCCGCATGTGCAAGCCCCCGGGG
GACCGGCTTCGGCAGACAGAAAACCGCGCCACGCGCTGCAAGGTGGAACGGCTGCAGCTGCTTCTGCAGC
AGAAACGGCTCCGTAGAAAGGCCCGGCGGGACGCGCGGGGTCCGTACCACTGGTCACCCAGCCGCAAGGC
CGGCCGCAGCGACAGCAGTAGCAGCGGGGGCGGCGGCAGCCCCAGCGAGGCCTCCGGCTTGGGCCTCGAC
TTCGAGGACTCCGTGTGGAAGCCAGAAGTCAACCCTGACATCAAGTCAGAGTTCGTGGTGGCTTAG

Translation (511 aa):
MEPQPGGARSCRRGAPGGACELGPAAEAAPMSLAIHSTTGTRYDLAVPPDETVEGLRKRLSQRLKVPKER
LALLHKDTRLSSGKLQEFGVGDGSKLTLVPTVEAGLMSQASRPEQSVMQALESLTETQPPAAPGPGRAGG
GGFRKYRFILFKRPWHRQGPQSPERGGERPQVSDFLSGRSPLTLALRVGDHMMFVQLQLAAQHAPLQHRH
VLAAAAAAAAARGDPSIASPVSSPCRPVSSAARVPPVPTSPSPASPSPITAGSFRSHAASTTCPEQMDCS
PTASSSASPGASTTSTPGASPAPRSRKPGAVIESFVNHAPGVFSGTFSGTLHPNCQDSSGRPRRDIGTIL
QILNDLLSATRHYQGMPPSLAQLRCHAQCSPASPAPDLAPRTTSCEKLTAAPSASLLQGQSQIRMCKPPG
DRLRQTENRATRCKVERLQLLLQQKRLRRKARRDARGPYHWSPSRKAGRSDSSSSGGGGSPSEASGLGLD
FEDSVWKPEVNPDIKSEFVVA


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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