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Report for CCDS92439.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92439.1 Public Homo sapiens 18 LDLRAD4 24 110 108 CCDS HistoryNCBI Gene:753Re-query CCDS DB by CCDS ID:92439.1Re-query CCDS DB by GeneID:753See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 92439.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000679177.1 ENSP00000504217.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000679177.1Link to Ensembl Protein Viewer:ENSP00000504217.1Re-query CCDS DB by Nucleotide ID:ENST00000679177Re-query CCDS DB by Protein ID:ENSP00000504217
Original member Current member EBI ENST00000677055.1 ENSP00000504396.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000677055.1Link to Ensembl Protein Viewer:ENSP00000504396.1Re-query CCDS DB by Nucleotide ID:ENST00000677055Re-query CCDS DB by Protein ID:ENSP00000504396
Original member Current member EBI ENST00000679167.1 ENSP00000504651.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000679167.1Link to Ensembl Protein Viewer:ENSP00000504651.1Re-query CCDS DB by Nucleotide ID:ENST00000679167Re-query CCDS DB by Protein ID:ENSP00000504651
Original member Current member NCBI NM_001394666.1 NP_001381595.1 Accepted alive Link to Nucleotide Sequence:NM_001394666.1Link to Protein Sequence:NP_001381595.1Re-query CCDS DB by Nucleotide ID:NM_001394666Re-query CCDS DB by Protein ID:NP_001381595Link to BLAST:NP_001381595.1
Original member Current member NCBI NM_001394667.1 NP_001381596.1 Accepted alive Link to Nucleotide Sequence:NM_001394667.1Link to Protein Sequence:NP_001381596.1Re-query CCDS DB by Nucleotide ID:NM_001394667Re-query CCDS DB by Protein ID:NP_001381596Link to BLAST:NP_001381596.1

Chromosomal Locations for CCDS 92439.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 13387723 13387762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 13621117 13621271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 13643359 13643412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 13645127 13645657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (780 nt):
ATGCCGGAAGCTGGTTTTCAGGCCACAAATGCTTTCACAGCGGAGCTGGAGTTCGCCCAAATCATCATCA
TCGTCGTGGTGGTCACGGTGATGGTGGTGGTCATCGTCTGCCTGCTGAACCACTACAAAGTCTCCACGCG
GTCCTTCATCAACCGCCCGAACCAGAGCCGGAGGCGGGAGGACGGGCTGCCGCAGGAAGGGTGCCTGTGG
CCTTCAGACAGCGCCGCACCGCGGCTGGGCGCCTCGGAGATCATGCATGCCCCGCGGTCCAGGGACAGGT
TCACAGCGCCGTCCTTCATCCAGAGGGATCGCTTCAGCCGCTTCCAGCCCACCTACCCCTATGTGCAGCA
CGAGATTGATCTTCCTCCCACCATCTCCCTGTCCGACGGTGAAGAGCCACCTCCTTACCAGGGGCCCTGC
ACCCTGCAGCTCCGGGACCCTGAACAGCAGATGGAACTCAACCGAGAGTCCGTGAGGGCCCCACCCAACC
GAACCATATTTGACAGTGATTTAATAGACATTGCTATGTATAGCGGGGGTCCATGCCCACCCAGCAGCAA
CTCGGGCATCAGTGCAAGCACCTGCAGCAGTAACGGGAGGATGGAGGGGCCACCCCCCACATACAGCGAG
GTGATGGGCCACCACCCAGGCGCCTCTTTCCTCCATCACCAGCGCAGCAACGCACACAGGGGCAGCAGAC
TGCAGTTTCAGCAGAACAATGCAGAGAGCACAATAGTACCCATCAAAGGCAAAGATAGGAAGCCTGGGAA
CCTGGTCTGA

Translation (259 aa):
MPEAGFQATNAFTAELEFAQIIIIVVVVTVMVVVIVCLLNHYKVSTRSFINRPNQSRRREDGLPQEGCLW
PSDSAAPRLGASEIMHAPRSRDRFTAPSFIQRDRFSRFQPTYPYVQHEIDLPPTISLSDGEEPPPYQGPC
TLQLRDPEQQMELNRESVRAPPNRTIFDSDLIDIAMYSGGPCPPSSNSGISASTCSSNGRMEGPPPTYSE
VMGHHPGASFLHHQRSNAHRGSRLQFQQNNAESTIVPIKGKDRKPGNLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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