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Report for CCDS92428.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92428.1 Public Homo sapiens 18 L3MBTL4 24 110 108 CCDS HistoryNCBI Gene:91133Re-query CCDS DB by CCDS ID:92428.1Re-query CCDS DB by GeneID:91133See the combined annotation on chromosome 18 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 92428.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000400104.7 ENSP00000382975.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000400104.7Link to Ensembl Protein Viewer:ENSP00000382975.3Re-query CCDS DB by Nucleotide ID:ENST00000400104Re-query CCDS DB by Protein ID:ENSP00000382975
Original member Current member NCBI NM_001365767.2 NP_001352696.1 Accepted alive Link to Nucleotide Sequence:NM_001365767.2Link to Protein Sequence:NP_001352696.1Re-query CCDS DB by Nucleotide ID:NM_001365767Re-query CCDS DB by Protein ID:NP_001352696Link to BLAST:NP_001352696.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001352696.1 534 Q8NA19-2 534 100% 0 0

Chromosomal Locations for CCDS 92428.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 18 (NC_000018.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18See the combined annotation on chromosome 18 in Sequence Viewer

Chromosome Start Stop Links
18 6032115 6032275 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6080881 6080951 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6093355 6093528 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6138194 6138296 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6171828 6171942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6213149 6213259 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6215750 6215835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6237964 6238040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6239718 6239872 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6241358 6241449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6243294 6243429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6244484 6244588 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6263947 6264038 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6301903 6301957 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18
18 6311554 6311625 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 18Link to Ensembl Genome Browser on chromosome 18

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1605 nt):
ATGAAACAGCCCAACAGGAAAAGGAAGCTTAATATGGATTCCAAAGAGCGTTTGGATCAGGACGGACGCT
TGGAGCAAGCTGAAGAGGAAAAGAAGCCCAAGGATAGCACAACCCCTTTGAGTCACGTCCCTTCAGCGGC
TGCACAGGGAGCATGGTCTTGGGAGTGGTACTTGAAAGAACAGAAGGCTGTCGCAGCACCTGTTGAGCTG
TTTTCCAAGGATCAGTCCTTTCCAGAGCATGAAAATGGTTTTCAGATTGGAATGAGATTAGAAGGCATTG
ATCCCCGACATCCATCGGTATTCTGTGTGCTTTCTGTAGCGGAGGTTTGTGGTTACCGTCTAAGACTTCA
TTTTGATGGTTATTTAAGTTGCTATGATTTTTGGACCAATGCTGGTTCCCCTGACATTCATCCAGTAGGA
TGGTGTGAAAAGACCAAACATGAACTGCACATCCCTAAGGGTTATAGAAAAGATAAATTTGTTTGGATGG
ATTACTTGAAGGCCTGCAAATTGCAAAATGCTCCAAAGAAATTATTCAGAAACAGAAGTCCTAATGGGCC
AATGTCTAAAGAATTTCAGGTTGGAATGAAGCTGGAGGCCGTGGACAGGAAGAACCCTTCCTTGGTGTGT
GTGGCGACCATAGCAGATATTGTTGAAGATCGCTTACTAGTGCATTTTGACAACTGGGATGATAGTTACG
ATTACTGGTGCGATGTTAATAGCCCTTATGTCCAGCCAGTTGGTTGGTGTCAGGAGAATGGAAGAACTCT
GATAGCACCCCAAGGTTATCCCAATCCAGAAAATTTTTCCTGGACAGAATACCTGGAAGCTACTCAAACC
AATGCAGTTCCTGCCAAAGTTTTTAAAATGAGGTTGCCTCATGGTTTTCTGCCAAATATGAAACTTGAAG
TTGTGGATAAACGGAACCCCAGGTTAATTCGTGTTGCTACGATTGTAGATGTTGATGACCAAAGAGTAAA
GGTTCATTTTGATGGTTGGGACCATAAGTATGACTACTGGGTGGAGGCAGACAGCCCTGATATCCACCCG
ATCGGATGGTGTGATGTCACAGGGCATCCACTGGAAGTGCCACAGCGAACGAATGACCTGAAGATCCTTC
CAGGTCAAGCTGTCTGTCCTACTCCCGGGTGCCGAGGAATAGGCCATATCCGTGGTCCACGTTATTCGGG
ACATCACAGTGCTTTTGGCTGCCCGTATTCAGACATGAACTTGAAAAAGGAGGCAACACTTCACGATCGT
TTGAGAGAACAAACACAGGCAAATTTGGAATCAGACTCTTCACATTCAAAATCAAAAAGCCTCTGTAGTT
TGAACTTCAATGGAAAACATGAAAAGGTGAACAGTCAGCCCAGACTTGTACAGCAGGCAAAGTGTTTGAA
AATCAAAGGAAAAGAAGATATTGACTTGGATAATCTCTTCAGAGGCCGAGTGCGGTGGCTCATGCCTGTA
ATCCCAGCACTTTGGGAGGCCGAGGCAGGCAGATCACGAGATCAGGAGATCAAGACCATCCTGGCCAACG
CAGTGAAACCCCGTCTCTACCAAAAATACAAAAAATTAGCCAGGCGTGGTGGCGGGTGCCTATAG

Translation (534 aa):
MKQPNRKRKLNMDSKERLDQDGRLEQAEEEKKPKDSTTPLSHVPSAAAQGAWSWEWYLKEQKAVAAPVEL
FSKDQSFPEHENGFQIGMRLEGIDPRHPSVFCVLSVAEVCGYRLRLHFDGYLSCYDFWTNAGSPDIHPVG
WCEKTKHELHIPKGYRKDKFVWMDYLKACKLQNAPKKLFRNRSPNGPMSKEFQVGMKLEAVDRKNPSLVC
VATIADIVEDRLLVHFDNWDDSYDYWCDVNSPYVQPVGWCQENGRTLIAPQGYPNPENFSWTEYLEATQT
NAVPAKVFKMRLPHGFLPNMKLEVVDKRNPRLIRVATIVDVDDQRVKVHFDGWDHKYDYWVEADSPDIHP
IGWCDVTGHPLEVPQRTNDLKILPGQAVCPTPGCRGIGHIRGPRYSGHHSAFGCPYSDMNLKKEATLHDR
LREQTQANLESDSSHSKSKSLCSLNFNGKHEKVNSQPRLVQQAKCLKIKGKEDIDLDNLFRGRVRWLMPV
IPALWEAEAGRSRDQEIKTILANAVKPRLYQKYKKLARRGGGCL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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