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Report for CCDS92368.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92368.1 Public Homo sapiens 17 SEPTIN4 24 110 108 CCDS HistoryNCBI Gene:5414Re-query CCDS DB by CCDS ID:92368.1Re-query CCDS DB by GeneID:5414See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 92368.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000672673.2 ENSP00000500383.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000672673.2Link to Ensembl Protein Viewer:ENSP00000500383.1Re-query CCDS DB by Nucleotide ID:ENST00000672673Re-query CCDS DB by Protein ID:ENSP00000500383
Original member Current member NCBI NM_001368771.2 NP_001355700.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001368771.2Link to Protein Sequence:NP_001355700.1Re-query CCDS DB by Nucleotide ID:NM_001368771Re-query CCDS DB by Protein ID:NP_001355700Link to BLAST:NP_001355700.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001355700.1 996 O43236-7 996 100% 0 0

Chromosomal Locations for CCDS 92368.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 58520426 58520485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58520743 58520842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58520998 58521160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58521254 58521350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58521545 58521646 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58521736 58521853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58521967 58522101 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58525078 58525201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58525695 58525781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58526220 58526313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58526682 58526978 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58540666 58540673 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58541922 58541966 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 58542626 58544186 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2991 nt):
ATGGTCAAGACAAATAAACCTGGGGCCAAGGTAGCGGTTTCAGCACAGAGAGGGTCTGAGGTTACTACTA
ACACATCCCCTCAGCAGGGACATGGGTACGTTCTTGCCTCAAGCCATCGAAGTGCTGCAGTCTCCCTGAA
CCCTTCCCACCGAAGATCAGAAGCTGCACATCCCACCACTCCCCATTCAGCATCAGACTACCCTCGATCT
GTCTCCCTCCAGTCAGGACCTGGACACTATGCAGTACCCACTCCTCGGGGACCCGAGACTGGACCAAGAA
CAGAATCATCCCGCCATTCCTCTCCCCATCTAAAGAGCCAGAAGACTCAGACACTGGCTTCCCATGCTTC
AAGCAGACAATGGAAAGTTAGTCCACCCAGAGAGGAAGCAGCACGAAGAGGCAGTGAGAGCAAGTCAGGG
CGCGAGGTCGGCCATCATGCTTCATCAATCCCAGATGCCAAATCTACTCATCAGTTGAGTTTTCAAGACC
AGAAGAATAACTTACAATCACAAATCTTAGAAGATGACCCACCATCCAAGGTCCAGAACCCCCAAGGAGT
CAGAGTTCCCCGTAGGATTTTGTCTTACCCAAAGGATGAAGCAGTACAAACTGAGCCCATCCAAAGAATT
ACGACTACTAGTGAGATCAGATCTCCAAGGAGTCCCTCTCTCCTAGAGCACGGAAGCAGCTGTGTCTCTG
CAGACTATCAGACAGCCCAGAGAAGGGTCCCTGTAGAAGAATCAGAAACAGGTCCTTACGGTCCAATTCC
TTCAAAACCCAAGGCCTTGTATAGGAATATGAACTTGGACTCATTGCTCAAACTCTCTGTCCTTAAAGAT
TCTGATGGTGTACACCGAGTTTCTGCACGGGTAGACCCTGAGTCTCTTCATAAGTATTCTGCCTATCCTG
AAACCAAGCCCTCCGCAAAGGTCTTAGTATCATCACAGGTGGAGTCCAACGTGAGGACCCCAATCCGAGG
AAACAGCGAGGTTGGCCGCAGGGTCACCATCTCCCCAGGGGTACAGTCAGTAGAGCCAACTCACCATGTG
ACAGTTCCATCAGTGTCTGAGGGCTCCCACAAGTCATCCATGTTTGTTACTCCAGAGCCCATCTATAAAC
AGCAAACCCAAAAACCCCCAGAAATTACTTACATGTCCCAAGGACCTACACCCAGGTATCCAGAACTCTC
GCAAAAGCCCTCCATCCATGCAGAACTGGAACTGACCCCTAGGCCCTTGCCTCCTCGGTCCTTACCTAGG
TACGGACCTGACTCCTCATGGTGGCCCTTGCTGAATCCTGAAGTTGAAACACCCCAAAGCCAGCTGACAA
CACCGGATTTTGAGCCTAAGTGCTCTCCTTCCCTAGATCTTTTATTGTCCGGTTTTAAAATAGACTCTAG
CCCTTTCTGTGAGGATCTGAAGTTCCAGAGAGAGAAGGCAAGCCTATCACCACCATCACCACCAAAGGAG
TTTCCAAGTTGGGCACCACTGAGTGAAGTGCCACAGACCCCCAAGCACACCTGCAAACAACCCATTCAAA
GGTTTACTGCTTTCTTCCTGGATGTCTCTGAGGAAATGTACAATCGTGTCATCTGGTGGCTAAAAGATGA
GGAGATCAAGCGTTTCCTGGAGGACACCACGGATGATGGAGAACTGAGCAAGTTCGTGAAGGATTTCTCA
GGAAATGCGAGCTGCCACCCACCAGAGGCTAAGACCTGGGCATCCAGGCCCCAAGTCCCGGAGCCAAGGC
CCCAGGCCCCGGACCTCTATGATGATGACCTGGAGTTCAGACCCCCCTCGCGGCCCCAGTCCTCTGACAA
CCAGCAGTACTTCTGTGCCCCAGCCCCTCTCAGCCCATCTGCCAGGCCCCGCAGCCCATGGGGCAAGCTT
GATCCCTATGATTCCTCTGAGGATGACAAGGAGTATGTGGGCTTTGCAACCCTCCCCAACCAAGTCCACC
GAAAGTCCGTGAAGAAAGGCTTTGACTTTACCCTCATGGTGGCAGGAGAGTCTGGCCTGGGCAAATCCAC
ACTTGTCAATAGCCTCTTCCTCACTGATCTGTACCGGGACCGGAAACTTCTTGGTGCTGAAGAGAGGATC
ATGCAAACTGTGGAGATCACTAAGCATGCAGTGGACATAGAAGAGAAGGGTGTGAGGCTGCGGCTCACCA
TTGTGGACACACCAGGTTTTGGGGATGCAGTCAACAACACAGAGTGCTGGAAGCCTGTGGCAGAATACAT
TGATCAGCAGTTTGAGCAGTATTTCCGAGACGAGAGTGGCCTGAACCGAAAGAACATCCAAGACAACAGG
GTGCACTGCTGCCTGTACTTCATCTCACCCTTCGGCCATGGGCTCCGGCCATTGGATGTTGAATTCATGA
AGGCCCTGCATCAGCGGGTCAACATCGTGCCTATCCTGGCTAAGGCAGACACACTGACACCTCCCGAAGT
GGACCACAAGAAACGCAAAATCCGGGAGGAGATTGAGCATTTTGGAATCAAGATCTATCAATTCCCAGAC
TGTGACTCTGATGAGGATGAGGACTTCAAATTGCAGGACCAAGCCCTAAAGGAAAGCATCCCATTTGCAG
TAATTGGCAGCAACACTGTAGTAGAGGCCAGAGGGCGGCGAGTTCGGGGTCGACTCTACCCCTGGGGCAT
CGTGGAAGTGGAAAACCCAGGGCACTGCGACTTTGTGAAGCTGAGGACAATGCTGGTACGTACCCACATG
CAGGACCTGAAGGATGTGACACGGGAGACACATTATGAGAACTACCGGGCACAGTGCATCCAGAGCATGA
CCCGCCTGGTGGTGAAGGAACGGAATCGCAACAAACTGACTCGGGAAAGTGGTACCGACTTCCCCATCCC
TGCTGTCCCACCAGGGACAGATCCAGAAACTGAGAAGCTTATCCGAGAGAAAGATGAGGAGCTGCGGCGG
ATGCAGGAGATGCTACACAAAATACAAAAACAGATGAAGGAGAACTATTAA

Translation (996 aa):
MVKTNKPGAKVAVSAQRGSEVTTNTSPQQGHGYVLASSHRSAAVSLNPSHRRSEAAHPTTPHSASDYPRS
VSLQSGPGHYAVPTPRGPETGPRTESSRHSSPHLKSQKTQTLASHASSRQWKVSPPREEAARRGSESKSG
REVGHHASSIPDAKSTHQLSFQDQKNNLQSQILEDDPPSKVQNPQGVRVPRRILSYPKDEAVQTEPIQRI
TTTSEIRSPRSPSLLEHGSSCVSADYQTAQRRVPVEESETGPYGPIPSKPKALYRNMNLDSLLKLSVLKD
SDGVHRVSARVDPESLHKYSAYPETKPSAKVLVSSQVESNVRTPIRGNSEVGRRVTISPGVQSVEPTHHV
TVPSVSEGSHKSSMFVTPEPIYKQQTQKPPEITYMSQGPTPRYPELSQKPSIHAELELTPRPLPPRSLPR
YGPDSSWWPLLNPEVETPQSQLTTPDFEPKCSPSLDLLLSGFKIDSSPFCEDLKFQREKASLSPPSPPKE
FPSWAPLSEVPQTPKHTCKQPIQRFTAFFLDVSEEMYNRVIWWLKDEEIKRFLEDTTDDGELSKFVKDFS
GNASCHPPEAKTWASRPQVPEPRPQAPDLYDDDLEFRPPSRPQSSDNQQYFCAPAPLSPSARPRSPWGKL
DPYDSSEDDKEYVGFATLPNQVHRKSVKKGFDFTLMVAGESGLGKSTLVNSLFLTDLYRDRKLLGAEERI
MQTVEITKHAVDIEEKGVRLRLTIVDTPGFGDAVNNTECWKPVAEYIDQQFEQYFRDESGLNRKNIQDNR
VHCCLYFISPFGHGLRPLDVEFMKALHQRVNIVPILAKADTLTPPEVDHKKRKIREEIEHFGIKIYQFPD
CDSDEDEDFKLQDQALKESIPFAVIGSNTVVEARGRRVRGRLYPWGIVEVENPGHCDFVKLRTMLVRTHM
QDLKDVTRETHYENYRAQCIQSMTRLVVKERNRNKLTRESGTDFPIPAVPPGTDPETEKLIREKDEELRR
MQEMLHKIQKQMKENY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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