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Report for CCDS92286.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92286.1 Public Homo sapiens 17 SSH2 24 110 108 CCDS HistoryNCBI Gene:85464Re-query CCDS DB by CCDS ID:92286.1Re-query CCDS DB by GeneID:85464See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 92286.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000324677.12 ENSP00000497894.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000324677.12Link to Ensembl Protein Viewer:ENSP00000497894.1Re-query CCDS DB by Nucleotide ID:ENST00000324677Re-query CCDS DB by Protein ID:ENSP00000497894
Original member Current member NCBI NM_001282131.2 NP_001269060.1 Accepted alive Link to Nucleotide Sequence:NM_001282131.2Link to Protein Sequence:NP_001269060.1Re-query CCDS DB by Nucleotide ID:NM_001282131Re-query CCDS DB by Protein ID:NP_001269060Link to BLAST:NP_001269060.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001269060.1 202 Q76I76-2 202 99.505% 0 1

Chromosomal Locations for CCDS 92286.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 29674105 29674159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29676820 29676885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29677673 29677741 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29684563 29684684 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29695459 29695523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29702959 29703062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 29761150 29761277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (609 nt):
ATGACCCTGAGCACGTTGGCCCGCAAGAGGAAGGCGCCCCTCGCTTGCACCTGCAGCCTCGGTGGCCCCG
ACATGATTCCTTACTTCTCCGCCAACGCGGTCATCTCGCAGAACGCCATCAACCAGCTCATCAGCGAGAG
CTTTCTAACTGTCAAAGGTGCTGCCCTTTTTCTACCACGGGGAAATGGCTCATCCACACCAAGAATCAGC
CACAGACGGAACAAGCATGCAGGCGATCTCCAACAGCATCTCCAAGCAATGTTCATTTTACTCCGCCCAG
AAGACAACATCAGGCTGGCTGTAAGACTGGAAAGTACTTACCAGAATCGAACACGCTATATGGTAGTGGT
TTCAACTAATGGTAGACAAGACACTGAAGAAAGCATCGTCCTAGGAATGGATTTCTCCTCTAATGACAGT
AGCACTTGTACCATGGGCTTAGTTTTGCCTCTCTGGAGCGACACGCTAATTCATTTGGATGGTGATGGTG
GGTTCAGTGTATCGACGGATAACAGAGTTCACATATTCAAACCTGTATCTGTGCAGGCAATGTGGGTTGA
CAGGGATTCAAGGAACAAACACTGTGATGTACTATTGGTGGAAGAATGA

Translation (202 aa):
MTLSTLARKRKAPLACTCSLGGPDMIPYFSANAVISQNAINQLISESFLTVKGAALFLPRGNGSSTPRIS
HRRNKHAGDLQQHLQAMFILLRPEDNIRLAVRLESTYQNRTRYMVVVSTNGRQDTEESIVLGMDFSSNDS
STCTMGLVLPLWSDTLIHLDGDGGFSVSTDNRVHIFKPVSVQAMWVDRDSRNKHCDVLLVEE


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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