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Report for CCDS92273.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
92273.1 Public Homo sapiens 17 SLC47A2 24 110 108 CCDS HistoryNCBI Gene:146802Re-query CCDS DB by CCDS ID:92273.1Re-query CCDS DB by GeneID:146802See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 92273.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000433844.4 ENSP00000391848.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000433844.4Link to Ensembl Protein Viewer:ENSP00000391848.3Re-query CCDS DB by Nucleotide ID:ENST00000433844Re-query CCDS DB by Protein ID:ENSP00000391848
Original member Current member NCBI NM_001099646.3 NP_001093116.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001099646.3Link to Protein Sequence:NP_001093116.1Re-query CCDS DB by Nucleotide ID:NM_001099646Re-query CCDS DB by Protein ID:NP_001093116Link to BLAST:NP_001093116.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001093116.1 566 Q86VL8-3 566 100% 0 0

Chromosomal Locations for CCDS 92273.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 19678686 19678906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19679952 19680039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19681367 19681461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19681538 19681670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19702605 19702674 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19703092 19703167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19704070 19704178 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19705436 19705503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19706648 19706761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19707746 19707843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19708302 19708399 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19708716 19708760 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19712703 19712745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19713825 19713973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19714721 19714789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19715116 19715217 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 19716433 19716555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1701 nt):
ATGGACAGCCTCCAGGACACAGTGGCCCTGGACCATGGGGGCTGCTGCCCTGCCCTCAGCAGGCTGGTTC
CCAGAGGCTTTGGGACTGAGATGTGGACTCTCTTTGCCCTTTCTGGACCCCTGTTCCTGTTCCAGGTGCT
GACTTTTATGATCTACATCGTGAGCACTGTGTTCTGCGGGCACCTGGGCAAGGTGGAGCTGGCATCGGTG
ACCCTCGCGGTGGCCTTTGTCAATGTCTGCGGAGTTTCTGTAGGAGTTGGTTTGTCTTCGGCATGTGACA
CCTTGATGTCTCAGAGCTTCGGCAGCCCCAACAAGAAGCACGTGGGCGTGATCCTGCAGCGGGGCGCGCT
GGTCCTGCTCCTCTGCTGCCTCCCTTGCTGGGCGCTCTTCCTCAACACCCAGCACATCCTGCTGCTCTTC
CGGCAGGACCCGGACGTGTCCAGGTTGACCCAGGACTATGTAATGATTTTCATTCCAGGACTTCCGGTGA
TTTTTCTTTACAATCTGCTGGCAAAATATTTGCAAAATCAGAAGATCACCTGGCCCCAAGTCCTCAGTGG
TGTGGTGGGCAACTGTGTCAACGGTGTGGCCAACTATGCCCTGGTTTCTGTGCTGAACCTGGGGGTCAGG
GGCTCCGCCTATGCCAACATCATCTCCCAGTTTGCACAGACCGTCTTCCTCCTTCTCTACATTGTGCTGA
AGAAGCTGCACCTGGAGACGTGGGCAGGTTGGTCCAGCCAGTGCCTGCAGGACTGGGGCCCCTTCTTCTC
CCTGGCTGTCCCCAGCATGCTCATGATCTGTGTTGAGTGGTGGGCCTATGAGATCGGGAGCTTCCTCATG
GGGCTGCTCAGTGTGGTGGATCTCTCTGCCCAGGCTGTCATCTACGAGGTGGCCACTGTGACCTACATGA
TTCCCTTGGGGCTCAGCATCGGGGTCTGTGTCCGAGTGGGGATGGCTCTGGGGGCTGCGGATACTGTGCA
GGCCAAGCGCTCGGCCGTCTCGGGCGTGCTCAGCATAGTTGGCATTTCCCTGGTCCTGGGCACCCTGATA
AGCATCCTGAAAAATCAGCTGGGGCATATTTTTACCAATGATGAAGATGTCATTGCCCTGGTGAGCCAGG
TCTTGCCGGTTTATAGTGTCTTTCACGTGTTTGAGGCCATCTGTTGTGTCTATGGCGGAGTTCTGAGAGG
AACTGGGAAGCAGGCCTTTGGTGCCGCTGTGAATGCCATCACATATTACATCATCGGCCTACCACTGGGC
ATCCTTCTGACCTTTGTGGTCAGAATGAGAATCATGGGCCTCTGGCTGGGCATGCTGGCCTGTGTCTTCC
TGGCAACTGCTGCCTTTGTTGCTTATACTGCCCGGCTGGACTGGAAGCTTGCTGCAGAGGAGGCTAAGAA
ACATTCAGGCCGGCAGCAGCAGCAGAGAGCAGAGAGCACTGCAACCAGACCTGGGCCTGAGAAAGCAGTC
CTATCTTCAGTGGCTACAGGCAGTTCCCCTGGCATTACCTTGACAACGTATTCAAGGTCTGAGTGCCACG
TGGACTTCTTCAGGACTCCAGAGGAGGCCCACGCCCTTTCAGCTCCTACCAGCAGACTATCAGTGAAACA
GCTGGTCATCCGCCGTGGGGCTGCTCTGGGGGCGGCGTCAGCCACACTGATGGTGGGGCTCACGGTCAGG
ATCCTAGCCACCAGGCACTAG

Translation (566 aa):
MDSLQDTVALDHGGCCPALSRLVPRGFGTEMWTLFALSGPLFLFQVLTFMIYIVSTVFCGHLGKVELASV
TLAVAFVNVCGVSVGVGLSSACDTLMSQSFGSPNKKHVGVILQRGALVLLLCCLPCWALFLNTQHILLLF
RQDPDVSRLTQDYVMIFIPGLPVIFLYNLLAKYLQNQKITWPQVLSGVVGNCVNGVANYALVSVLNLGVR
GSAYANIISQFAQTVFLLLYIVLKKLHLETWAGWSSQCLQDWGPFFSLAVPSMLMICVEWWAYEIGSFLM
GLLSVVDLSAQAVIYEVATVTYMIPLGLSIGVCVRVGMALGAADTVQAKRSAVSGVLSIVGISLVLGTLI
SILKNQLGHIFTNDEDVIALVSQVLPVYSVFHVFEAICCVYGGVLRGTGKQAFGAAVNAITYYIIGLPLG
ILLTFVVRMRIMGLWLGMLACVFLATAAFVAYTARLDWKLAAEEAKKHSGRQQQQRAESTATRPGPEKAV
LSSVATGSSPGITLTTYSRSECHVDFFRTPEEAHALSAPTSRLSVKQLVIRRGAALGAASATLMVGLTVR
ILATRH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
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