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Report for CCDS9190.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9190.1 Public Homo sapiens 12 CCDC60 24 110 108 CCDS HistoryNCBI Gene:160777Re-query CCDS DB by CCDS ID:9190.1Re-query CCDS DB by GeneID:160777See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9190.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000327554.3 ENSP00000333374.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000327554.3Link to Ensembl Protein Viewer:ENSP00000333374.2Re-query CCDS DB by Nucleotide ID:ENST00000327554Re-query CCDS DB by Protein ID:ENSP00000333374
Original member Current member NCBI NM_178499.5 NP_848594.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_178499.5Link to Protein Sequence:NP_848594.2Re-query CCDS DB by Nucleotide ID:NM_178499Re-query CCDS DB by Protein ID:NP_848594Link to BLAST:NP_848594.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_848594.2 550 Q8IWA6 550 100% 0 0

Chromosomal Locations for CCDS 9190.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 119335177 119335266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 119428683 119428762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 119471994 119472164 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 119479094 119479201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 119488759 119488866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 119500078 119500168 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 119505069 119505303 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 119516623 119516707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 119520121 119520192 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 119522939 119523001 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 119523693 119523818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 119528615 119528746 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 119530874 119531063 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 119540614 119540715 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1653 nt):
ATGACCAAGGTTCCAGCCACCAAGAAGCTTCAGAGTTCCCCCAACTCGGGGGCTGTCCGGCCCTTTTATG
CCTCGGAGAACCTAAGGCAGGTCCCAGACAAGCCAATGAAGAGCATCAAGTATATGGACAAGGAAATAAT
AAACCTCAAAAAGGACCTTATACGAAGCCGCTTTTTGATCCAGTCTGTGAAGATAGGCCGTGGATATTTT
GCTATTCTGAGGGAAGAGACTGCAAAGAAAAAGAAGCAACAACAACTTCAGAAACTGAAAGAGGAGGAAA
GAAATAAATTCCAGCCAGCCGAAAAGATCTCAGAAATCCACTATGGGGACACCTTATTGAGCACATATGA
TGATGAGAAGTTGAAGACACTGGGAGCTAGAGTCACACGTCGCCCATTCACTCCCATCCACAGCTGCATC
ATTTCTCCCTCGCTAACCGAGGCTCACGTCGAGCCCCTCTTCCGCCAGCTCTGTGCTCTCCACTGGCTTC
TGGAGGCCCTGACTATTGACCACACCCACCACACCATGAAGCCTGTGATCACCTGCTGGAACCCAAAGGA
CCCGGGTGGAAGCAAGAGCACCATTAAAAAAATCAATAAGGACAAGTCCATGGGACAGAAATGGGAGCAT
TTCATCACAGCGCCAAAGACCAAGAAATTCAAAATTCCCACAATGCGAGTCACCAACCGCAAACCAAGCC
GGCGAGGCTCCACACTCAGTCTGAGTCGGGCCAGTGGGGGGTCCTCTCCCCAGAGCAGCATGATCTCTGT
GAACCCTGGCTCGGATGAGCCCCCAAGTGTGAACACCCAGGTGACCAGCAGCAAGGACATTGAGGACAAT
GAGTCATCTTCAACCAAGCCAGATGAAGAACCTCTGTATATGAATCTGCAGAAGCTCCTGGAGATGGTTC
GGGAAGATGCCCGGAGGACAGTCACAATAGAAAATGGGATGCAAAGAAAAGCACCCAGCATCTTGTCAGT
GCTGAAACAAAACAAGAGTAATTCTGCTTATAAGGAAATGCAGACCACTCTCAAATCAAGTGAGAGATCC
AGCAGTACAAGTGCAGAAAGCCACATCCAACCAGTCCAGAAGAAGTCTAAAAACCGCACTAATTGTGACA
TCAACATCCACTACAAGAGTGGGGTGTGTAACACCATGAGGGCCAAGTTTTACAGCGTAGCCCAGGAGGC
TGGCTTCTGCCTGCAGGACAAGATGGAAATCCTCATGAAGCGCCAAGAAGAGAGAGGTATCCAGAAGTTC
CGTGCTTTTGTCCTTGTCTCAAATTTTCAAAAGGACATAGCAAAAATGAGACATCACATATCTGTAGTAA
AAGGAGATGCAGAAGAAATTGCAGACCACTGGTACTTTGATCTGTTGTCCAAACTGCCAGAGGATCTAAA
GAACTTCCGCCCCGCCAAAAAGATCCTGGTGAAACTGCAGAAGTTTGGAGAAAACCTGGACTTGCGGATT
CGACCCCATGTCCTCCTGAAGGTGCTGCAGGATCTGAGGATTTGGGAACTGTGCTCCCCTGACATCGCTG
TGGCTATTGAGTTTGTGCGAGAACACATCATCCATATGCCTCAAGAGGATTACATCAGCTGGCTGCAGAG
CCGGATCAACATACCCATTGGGCCCTACAGCGCCCTGAGGTAG

Translation (550 aa):
MTKVPATKKLQSSPNSGAVRPFYASENLRQVPDKPMKSIKYMDKEIINLKKDLIRSRFLIQSVKIGRGYF
AILREETAKKKKQQQLQKLKEEERNKFQPAEKISEIHYGDTLLSTYDDEKLKTLGARVTRRPFTPIHSCI
ISPSLTEAHVEPLFRQLCALHWLLEALTIDHTHHTMKPVITCWNPKDPGGSKSTIKKINKDKSMGQKWEH
FITAPKTKKFKIPTMRVTNRKPSRRGSTLSLSRASGGSSPQSSMISVNPGSDEPPSVNTQVTSSKDIEDN
ESSSTKPDEEPLYMNLQKLLEMVREDARRTVTIENGMQRKAPSILSVLKQNKSNSAYKEMQTTLKSSERS
SSTSAESHIQPVQKKSKNRTNCDINIHYKSGVCNTMRAKFYSVAQEAGFCLQDKMEILMKRQEERGIQKF
RAFVLVSNFQKDIAKMRHHISVVKGDAEEIADHWYFDLLSKLPEDLKNFRPAKKILVKLQKFGENLDLRI
RPHVLLKVLQDLRIWELCSPDIAVAIEFVREHIIHMPQEDYISWLQSRINIPIGPYSALR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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