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Report for CCDS91853.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
91853.1 Public Homo sapiens 14 IRF9 24 110 108 CCDS HistoryNCBI Gene:10379Re-query CCDS DB by CCDS ID:91853.1Re-query CCDS DB by GeneID:10379See the combined annotation on chromosome 14 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 91853.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000698995.1 ENSP00000514071.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000698995.1Link to Ensembl Protein Viewer:ENSP00000514071.1Re-query CCDS DB by Nucleotide ID:ENST00000698995Re-query CCDS DB by Protein ID:ENSP00000514071
Original member Current member NCBI NM_001385400.1 NP_001372329.1 Accepted alive Link to Nucleotide Sequence:NM_001385400.1Link to Protein Sequence:NP_001372329.1Re-query CCDS DB by Nucleotide ID:NM_001385400Re-query CCDS DB by Protein ID:NP_001372329Link to BLAST:NP_001372329.1

Chromosomal Locations for CCDS 91853.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 14 (NC_000014.9)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14See the combined annotation on chromosome 14 in Sequence Viewer

Chromosome Start Stop Links
14 24162145 24162324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24162966 24163149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24163378 24163508 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24163878 24163959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24164063 24164134 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24164587 24164955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24165057 24165183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24165847 24165962 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14
14 24166122 24166255 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 14Link to Ensembl Genome Browser on chromosome 14

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1395 nt):
ATGGCATCAGGCAGGGCACGCTGCACCCGAAAACTCCGGAACTGGGTGGTGGAGCAAGTGGAGAGTGGGC
AGTTTCCCGGAGTGTGCTGGGATGATACAGCTAAGACCATGTTCCGGATTCCCTGGAAACATGCAGGCAA
GCAGGACTTCCGGGAGGACCAGGATGCTGCCTTCTTCAAGGCCTGGGCAATATTTAAGGGAAAGTATAAG
GAGGGGGACACAGGAGGTCCAGCTGTCTGGAAGACTCGCCTGCGCTGTGCACTCAACAAGAGTTCTGAAT
TTAAGGAGGTTCCTGAGAGGGGCCGCATGGATGTTGCTGAGCCCTACAAGGTGTATCAGTTGCTGCCACC
AGGAATCGTCTCTGGCCAGCCAGGGACTCAGAAAGTACCATCAAAGCGACAGCACAGTTCTGTGTCCTCT
GAGAGGAAGGAGGAAGAGGATGCCATGCAGAACTGCACACTCAGTCCCTCTGTGCTCCAGGACTCCCTCA
ATAATGAGGAGGAGGGGGCCAGTGGGGGAGCAGTCCATTCAGACATTGGGAGCAGCAGCAGCAGCAGCAG
CCCTGAGCCACAGGAAGTTACAGACACAACTGAGGCCCCCTTTCAAGGGGATCAGAGGTCCCTGGAGTTT
CTGCTTCCTCCAGAGCCAGCACCAGGTAGGGCTGTTCTATCCCCAGACTACTCACTGCTGCTCACCTTCA
TCTACAACGGGCGCGTGGTGGGCGAGGCCCAGGTGCAAAGCCTGGATTGCCGCCTTGTGGCTGAGCCCTC
AGGCTCTGAGAGCAGCATGGAGCAGGTGCTGTTCCCCAAGCCTGGCCCACTGGAGCCCACGCAGCGCCTG
CTGAGCCAGCTTGAGAGGGGCATCCTAGTGGCCAGCAACCCCCGAGGCCTCTTCGTGCAGCGCCTTTGCC
CCATCCCCATCTCCTGGAATGCACCCCAGGCTCCACCTGGGCCAGGCCCGCATCTGCTGCCCAGCAACGA
GTGCGTGGAGCTCTTCAGAACCGCCTACTTCTGCAGAGATCCTCCATGTAGCCTATGCATGGCACTCCTG
CGCTTGTGTGTTGCATATCCTGTGTGGCCATATGCCCAGCCTGGCAGCTACCTGGCAGCTCTCCTCCAGC
CAAGACAATGGAAGAGGTGGTTCAGACTTGGTCAGGTACTTTCAGGGCCTGGGCCCCCCACCGAAGTTCC
AGGTAACACTGAATTTCTGGGAAGAGAGCCATGGCTCCAGCCATACTCCACAGAATCTTATCACAGTGAA
GATGGAGCAGGCCTTTGCCCGATACTTGCTGGAGCAGACTCCAGAGCAGCAGGCAGCCATTCTGTCCCTG
GTGTAGAGCCTGGGGGACCCATCTTCCACCTCACCTCTTTGTTCTTCCTGTCTCCTTTGAAGTAG

Translation (464 aa):
MASGRARCTRKLRNWVVEQVESGQFPGVCWDDTAKTMFRIPWKHAGKQDFREDQDAAFFKAWAIFKGKYK
EGDTGGPAVWKTRLRCALNKSSEFKEVPERGRMDVAEPYKVYQLLPPGIVSGQPGTQKVPSKRQHSSVSS
ERKEEEDAMQNCTLSPSVLQDSLNNEEEGASGGAVHSDIGSSSSSSSPEPQEVTDTTEAPFQGDQRSLEF
LLPPEPAPGRAVLSPDYSLLLTFIYNGRVVGEAQVQSLDCRLVAEPSGSESSMEQVLFPKPGPLEPTQRL
LSQLERGILVASNPRGLFVQRLCPIPISWNAPQAPPGPGPHLLPSNECVELFRTAYFCRDPPCSLCMALL
RLCVAYPVWPYAQPGSYLAALLQPRQWKRWFRLGQVLSGPGPPTEVPGNTEFLGREPWLQPYSTESYHSE
DGAGLCPILAGADSRAAGSHSVPGVEPGGPIFHLTSLFFLSPLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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