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Report for CCDS91821.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
91821.1 Public Homo sapiens 13 SLAIN1 24 110 108 CCDS HistoryNCBI Gene:122060Re-query CCDS DB by CCDS ID:91821.1Re-query CCDS DB by GeneID:122060See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 91821.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000705543.1 ENSP00000516138.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000705543.1Link to Ensembl Protein Viewer:ENSP00000516138.1Re-query CCDS DB by Nucleotide ID:ENST00000705543Re-query CCDS DB by Protein ID:ENSP00000516138
Original member Current member NCBI NM_001366665.1 NP_001353594.1 Accepted alive Link to Nucleotide Sequence:NM_001366665.1Link to Protein Sequence:NP_001353594.1Re-query CCDS DB by Nucleotide ID:NM_001366665Re-query CCDS DB by Protein ID:NP_001353594Link to BLAST:NP_001353594.1

Chromosomal Locations for CCDS 91821.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 77698924 77699057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77719532 77719671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77743016 77743165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77744283 77744432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77746514 77746855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77753203 77753358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77760828 77761110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77763145 77763220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1431 nt):
ATGGTAGGGGTTGGCCTCTGTCTGCGACTGTTACTGTTCTTTCGTTTTAAACGAACGCTGGACAGGATTT
GCGTGCTCTTCCTCCTCGGGTGGCATCGGAAGCCGCGCAGTGATGGATCTCTCTTTATAGAGAGGTTATA
CATTGGCTCTTCAAAGACGTTCACCTCATCAGAGAAATCCCTGACTCCTTTGCAGTGGTGTAGACATGTC
CTAGATAACCCAACTCCTGAGATGGAAGCAGCGAGACGTTCCCTGTGCTTTAGACTGGAGCAAGCTAGCC
GATGGCGGAGTCTCTTCTCTTCAACTGCCTCACTGGCTTTTCCTTATAGTCCTGTTGCAAGACTCAGCCC
TTATAGCAATGGCATTAATACTCCCAGCTTCTCTAAAACCTCAAATAAAGCAATACTAACACCTGAAAAA
ACAGGTTACACTTCCAGGGGCTCCCCACTCAGTCCCCAGTCATCTATCGACAGTGAGCTGAGTACTTCAG
AATTGGAGGATGATTCTATCTCCATGGGATATAAATTACAGGACCTCACTGATGTTCAGATCATGGCTCG
TCTGCAAGAAGAAAGTCTCAGGCAAGATTATGCTTCTACTTCAGCATCTGTATCAAGACATAGTTCCAGT
GTGTCATTGAGTTCAGGAAAAAAAGGGACATGTAGTGATCAAGAATATGACCAATACAGTCTGGAGGATG
AAGAGGAATTTGATCATTTGCCACCACCTCAGCCTCGTCTTCCAAGATGTTCCCCTTTCCAAAGAGGAAT
TCCCCATTCACAGACTTTCTCCAGCATTCGGGAGTGTAGGAGGAGCCCCAGTTCCCAGTATTTTCCTTCA
AATAATTACCAGCAGCAACAGTATTATTCACCTCAAGCCCAAACTCCAGATCAGCAACCAAATAGGACCA
ATGGAGATAAGCTCCGAAGAAGTATGCCTAACCTAGCCCGGATGCCAAGTACAACTGCCATTAGTAGCAA
CATTAGTTCTCCGGTCACCGTGCGAAATAGTCAGAGTTTTGACTCAAGCTTGCATGGAGCTGGAAATGGA
ATTTCAAGAATACAATCTTGTATTCCATCACCGGGACAGCTTCAACACAGGGTCCACAGCGTGGGGCATT
TCCCAGTGTCTATCCGACAGCCTCTTAAAGCCACAGCCTATGTGAGTCCAACCGTTCAAGGCAGCAGTAA
CATGCCTTTATCAAACGGCTTACAGCTGTATTCCAACACAGGAATCCCCACACCGAACAAAGCTGCAGCT
TCTGGGATAATGGGTCGCAGTGCACTCCCAAGACCTTCGTTGGCAATAAATGGGAGTAACCTGCCTCGAA
GCAAAATTGCACAACCTGTTAGAAGTTTTCTTCAGCCTCCAAAGCCTCTGTCTTCACTCAGCACTCTGAG
GGATGGAAATTGGAGAGATGGTTGCTACTAA

Translation (476 aa):
MVGVGLCLRLLLFFRFKRTLDRICVLFLLGWHRKPRSDGSLFIERLYIGSSKTFTSSEKSLTPLQWCRHV
LDNPTPEMEAARRSLCFRLEQASRWRSLFSSTASLAFPYSPVARLSPYSNGINTPSFSKTSNKAILTPEK
TGYTSRGSPLSPQSSIDSELSTSELEDDSISMGYKLQDLTDVQIMARLQEESLRQDYASTSASVSRHSSS
VSLSSGKKGTCSDQEYDQYSLEDEEEFDHLPPPQPRLPRCSPFQRGIPHSQTFSSIRECRRSPSSQYFPS
NNYQQQQYYSPQAQTPDQQPNRTNGDKLRRSMPNLARMPSTTAISSNISSPVTVRNSQSFDSSLHGAGNG
ISRIQSCIPSPGQLQHRVHSVGHFPVSIRQPLKATAYVSPTVQGSSNMPLSNGLQLYSNTGIPTPNKAAA
SGIMGRSALPRPSLAINGSNLPRSKIAQPVRSFLQPPKPLSSLSTLRDGNWRDGCY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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