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Report for CCDS91820.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
91820.1 Public Homo sapiens 13 SLAIN1 24 110 108 CCDS HistoryNCBI Gene:122060Re-query CCDS DB by CCDS ID:91820.1Re-query CCDS DB by GeneID:122060See the combined annotation on chromosome 13 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 91820.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000446759.6 ENSP00000403049.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000446759.6Link to Ensembl Protein Viewer:ENSP00000403049.2Re-query CCDS DB by Nucleotide ID:ENST00000446759Re-query CCDS DB by Protein ID:ENSP00000403049
Current member NCBI NM_001411026.1 NP_001397955.1 Accepted alive Link to Nucleotide Sequence:NM_001411026.1Link to Protein Sequence:NP_001397955.1Re-query CCDS DB by Nucleotide ID:NM_001411026Re-query CCDS DB by Protein ID:NP_001397955Link to BLAST:NP_001397955.1

Chromosomal Locations for CCDS 91820.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 13 (NC_000013.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13See the combined annotation on chromosome 13 in Sequence Viewer

Chromosome Start Stop Links
13 77697914 77698539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77719532 77719671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77743016 77743165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77744283 77744432 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77746514 77746855 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77753203 77753358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77760828 77761110 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13
13 77763145 77763220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 13Link to Ensembl Genome Browser on chromosome 13

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1923 nt):
ATGATGGCGGAGCAGGTGAAATGCGCCTCGGCAGGGGTCAGCTCTGGAGCGGGCTCCGGGCCGGTGGTGA
ACGCGGAGCTGGAGGTGAAGAAGCTGCAGGAGCTGGTGCGCAAGCTGGAGAAGCAGAACGAGCAGCTGCG
GAGTCGAGCGGCCAGCGCGGCCGCCGCCCCGCACCTGCTGCTGCTGCCGCCGCCGCCGCCCGCCGCGCCG
CCCCCCGCTGGCCTGCAGCCTTTGGGTCCTCGGAGCCCCCCGGCCGCCACGGCCACCGCCGCGGCCTCAG
GGGGCCTGGGGCTCGGGCTGGCGCTGGGCGCGGGGGGCGGTGGCGGCAGCGGTAGTGGCAGCGGCGGTGG
CTCCAGCCCCGCGTTCCCGGGCACCTTCTGCCTGCCTAGCCCCGCGCCCTCCCTGCTTTGCAGCCTGGCG
CAGCCACCCGAGGCGCCCTTCGTCTACTTCAAGCCGGCAGCAGGCTTCTTCGGCGCGGGCGGTGGCGGGC
CGGAGCCGGGGGGCGCGGGGACGCCGCCAGGGGCAGCTGCAGCGCCGCCCTCGCCGCCCCCCACGCTGCT
GGACGAGGTGGAATTGCTGGATCTGGAGAGCGTAGCCGCCTGGCGGGACGAGGACGACTACACCTGGTTA
TACATTGGCTCTTCAAAGACGTTCACCTCATCAGAGAAATCCCTGACTCCTTTGCAGTGGTGTAGACATG
TCCTAGATAACCCAACTCCTGAGATGGAAGCAGCGAGACGTTCCCTGTGCTTTAGACTGGAGCAAGCTAG
CCGATGGCGGAGTCTCTTCTCTTCAACTGCCTCACTGGCTTTTCCTTATAGTCCTGTTGCAAGACTCAGC
CCTTATAGCAATGGCATTAATACTCCCAGCTTCTCTAAAACCTCAAATAAAGCAATACTAACACCTGAAA
AAACAGGTTACACTTCCAGGGGCTCCCCACTCAGTCCCCAGTCATCTATCGACAGTGAGCTGAGTACTTC
AGAATTGGAGGATGATTCTATCTCCATGGGATATAAATTACAGGACCTCACTGATGTTCAGATCATGGCT
CGTCTGCAAGAAGAAAGTCTCAGGCAAGATTATGCTTCTACTTCAGCATCTGTATCAAGACATAGTTCCA
GTGTGTCATTGAGTTCAGGAAAAAAAGGGACATGTAGTGATCAAGAATATGACCAATACAGTCTGGAGGA
TGAAGAGGAATTTGATCATTTGCCACCACCTCAGCCTCGTCTTCCAAGATGTTCCCCTTTCCAAAGAGGA
ATTCCCCATTCACAGACTTTCTCCAGCATTCGGGAGTGTAGGAGGAGCCCCAGTTCCCAGTATTTTCCTT
CAAATAATTACCAGCAGCAACAGTATTATTCACCTCAAGCCCAAACTCCAGATCAGCAACCAAATAGGAC
CAATGGAGATAAGCTCCGAAGAAGTATGCCTAACCTAGCCCGGATGCCAAGTACAACTGCCATTAGTAGC
AACATTAGTTCTCCGGTCACCGTGCGAAATAGTCAGAGTTTTGACTCAAGCTTGCATGGAGCTGGAAATG
GAATTTCAAGAATACAATCTTGTATTCCATCACCGGGACAGCTTCAACACAGGGTCCACAGCGTGGGGCA
TTTCCCAGTGTCTATCCGACAGCCTCTTAAAGCCACAGCCTATGTGAGTCCAACCGTTCAAGGCAGCAGT
AACATGCCTTTATCAAACGGCTTACAGCTGTATTCCAACACAGGAATCCCCACACCGAACAAAGCTGCAG
CTTCTGGGATAATGGGTCGCAGTGCACTCCCAAGACCTTCGTTGGCAATAAATGGGAGTAACCTGCCTCG
AAGCAAAATTGCACAACCTGTTAGAAGTTTTCTTCAGCCTCCAAAGCCTCTGTCTTCACTCAGCACTCTG
AGGGATGGAAATTGGAGAGATGGTTGCTACTAA

Translation (640 aa):
MMAEQVKCASAGVSSGAGSGPVVNAELEVKKLQELVRKLEKQNEQLRSRAASAAAAPHLLLLPPPPPAAP
PPAGLQPLGPRSPPAATATAAASGGLGLGLALGAGGGGGSGSGSGGGSSPAFPGTFCLPSPAPSLLCSLA
QPPEAPFVYFKPAAGFFGAGGGGPEPGGAGTPPGAAAAPPSPPPTLLDEVELLDLESVAAWRDEDDYTWL
YIGSSKTFTSSEKSLTPLQWCRHVLDNPTPEMEAARRSLCFRLEQASRWRSLFSSTASLAFPYSPVARLS
PYSNGINTPSFSKTSNKAILTPEKTGYTSRGSPLSPQSSIDSELSTSELEDDSISMGYKLQDLTDVQIMA
RLQEESLRQDYASTSASVSRHSSSVSLSSGKKGTCSDQEYDQYSLEDEEEFDHLPPPQPRLPRCSPFQRG
IPHSQTFSSIRECRRSPSSQYFPSNNYQQQQYYSPQAQTPDQQPNRTNGDKLRRSMPNLARMPSTTAISS
NISSPVTVRNSQSFDSSLHGAGNGISRIQSCIPSPGQLQHRVHSVGHFPVSIRQPLKATAYVSPTVQGSS
NMPLSNGLQLYSNTGIPTPNKAAASGIMGRSALPRPSLAINGSNLPRSKIAQPVRSFLQPPKPLSSLSTL
RDGNWRDGCY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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