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Report for CCDS9179.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9179.1 Public Homo sapiens 12 SPRING1 24 110 108 CCDS HistoryNCBI Gene:79794Re-query CCDS DB by CCDS ID:9179.1Re-query CCDS DB by GeneID:79794See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9179.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000261318.5 ENSP00000261318.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000261318.5Link to Ensembl Protein Viewer:ENSP00000261318.3Re-query CCDS DB by Nucleotide ID:ENST00000261318Re-query CCDS DB by Protein ID:ENSP00000261318
Original member Current member NCBI NM_024738.4 NP_079014.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024738.4Link to Protein Sequence:NP_079014.1Re-query CCDS DB by Nucleotide ID:NM_024738Re-query CCDS DB by Protein ID:NP_079014Link to BLAST:NP_079014.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_079014.1 205 Q9H741 205 100% 0 0

Chromosomal Locations for CCDS 9179.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 116717810 116717893 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 116719763 116719876 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 116720296 116720447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 116723067 116723223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 116737790 116737900 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (618 nt):
ATGGTGAACCTGGCGGCCATGGTGTGGCGCCGGCTTCTGCGGAAGAGGTGGGTGCTCGCCCTGGTCTTCG
GGCTGTCGCTCGTCTACTTCCTCAGCAGCACCTTCAAGCAGGAGGAGAGGGCAGTGAGAGATAGGAATCT
CCTCCAGGTTCATGACCATAATCAGCCCATCCCGTGGAAAGTGCAGTTTAACTTGGGCAATAGCAGTCGT
CCGAGCAATCAGTGCCGCAACTCCATTCAAGGGAAGCACCTCATCACGGATGAACTCGGCTACGTTTGCG
AGAGGAAGGATTTGCTGGTAAATGGCTGCTGTAATGTCAACGTCCCTAGCACGAAGCAGTACTGCTGTGA
TGGCTGCTGGCCCAACGGCTGCTGCAGCGCCTATGAGTACTGTGTCTCCTGCTGCCTGCAGCCCAACAAG
CAACTTCTCCTGGAGCGCTTCCTCAACCGGGCAGCCGTGGCATTCCAGAACCTCTTCATGGCAGTCGAAG
ATCACTTTGAGTTGTGCCTGGCCAAATGCAGGACCTCATCTCAGAGCGTGCAGCATGAGAACACCTACCG
GGACCCCATAGCAAAGTATTGCTATGGAGAAAGCCCGCCCGAGCTCTTCCCCGCTTGA

Translation (205 aa):
MVNLAAMVWRRLLRKRWVLALVFGLSLVYFLSSTFKQEERAVRDRNLLQVHDHNQPIPWKVQFNLGNSSR
PSNQCRNSIQGKHLITDELGYVCERKDLLVNGCCNVNVPSTKQYCCDGCWPNGCCSAYEYCVSCCLQPNK
QLLLERFLNRAAVAFQNLFMAVEDHFELCLAKCRTSSQSVQHENTYRDPIAKYCYGESPPELFPA


Links Key
 Links to:   History report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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