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Report for CCDS9160.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9160.1 Public Homo sapiens 12 TRAFD1 24 110 108 CCDS HistoryNCBI Gene:10906Re-query CCDS DB by CCDS ID:9160.1Re-query CCDS DB by GeneID:10906See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9160.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000257604.9 ENSP00000257604.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000257604.9Link to Ensembl Protein Viewer:ENSP00000257604.5Re-query CCDS DB by Nucleotide ID:ENST00000257604Re-query CCDS DB by Protein ID:ENSP00000257604
Original member Current member EBI ENST00000412615.7 ENSP00000396526.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000412615.7Link to Ensembl Protein Viewer:ENSP00000396526.2Re-query CCDS DB by Nucleotide ID:ENST00000412615Re-query CCDS DB by Protein ID:ENSP00000396526
Original member Current member NCBI NM_001143906.2 NP_001137378.1 Accepted alive Link to Nucleotide Sequence:NM_001143906.2Link to Protein Sequence:NP_001137378.1Re-query CCDS DB by Nucleotide ID:NM_001143906Re-query CCDS DB by Protein ID:NP_001137378Link to BLAST:NP_001137378.1
Original member Current member NCBI NM_006700.3 NP_006691.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006700.3Link to Protein Sequence:NP_006691.1Re-query CCDS DB by Nucleotide ID:NM_006700Re-query CCDS DB by Protein ID:NP_006691Link to BLAST:NP_006691.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001137378.1 582 O14545-1 582 100% 0 0
NP_006691.1 582 O14545-1 582 100% 0 0

Chromosomal Locations for CCDS 9160.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 112130523 112130569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112134738 112134873 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112135013 112135066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112140819 112141224 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112142089 112142295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112145586 112145662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112148074 112148304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112149751 112149871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112151801 112152140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112152427 112152499 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 112152735 112152791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1749 nt):
ATGGCTGAATTTCTAGATGACCAGGAAACTCGACTGTGTGACAACTGCAAAAAAGAAATTCCTGTGTTTA
ACTTTACCATCCATGAGATCCACTGTCAAAGGAACATTGGTATGTGTCCTACCTGTAAGGAACCATTTCC
CAAATCTGACATGGAGACTCACATGGCTGCAGAACACTGTCAGGTGACCTGCAAATGTAACAAGAAGTTG
GAGAAGAGGCTGTTAAAGAAGCATGAGGAGACTGAGTGCCCTTTGCGGCTTGCTGTCTGCCAGCACTGTG
ATTTAGAACTTTCCATTCTCAAACTGAAGGAACATGAAGATTATTGTGGTGCCCGGACGGAACTATGTGG
CAACTGTGGTCGCAATGTCCTTGTGAAAGATCTGAAGACTCACCCTGAAGTTTGTGGGAGAGAGGGGGAG
GAAAAGAGAAATGAGGTTGCCATACCTCCTAATGCATATGATGAATCTTGGGGTCAGGATGGAATCTGGA
TTGCATCCCAACTCCTCAGACAAATTGAGGCTCTGGACCCACCCATGAGGCTGCCGCGAAGGCCCCTGAG
AGCCTTTGAATCAGATGTTTTCCACAATAGAACTACCAACCAAAGGAACATTACAGCCCAGGTTTCAATT
CAGAATAATCTGTTTGAAGAACAAGAGAGGCAGGAAAGGAATAGAGGCCAACAGCCCCCCAAAGAGGGTG
GTGAAGAGAGTGCAAACTTGGACTTCATGTTGGCCCTAAGTCTGCAAAATGAAGGCCAAGCCTCCAGTGT
GGCAGAGCAGGACTTCTGGAGGGCCGTATGTGAGGCCGACCAGTCTCATGGCGGTCCCAGGTCTCTCAGT
GACATAAAGGGTGCAGCTGACGAGATCATGTTGCCTTGTGAATTTTGTGAGGAGCTCTACCCAGAGGAAC
TGCTGATTGACCATCAGACAAGCTGTAACCCTTCACGTGCCTTACCTTCACTCAATACTGGCAGCTCTTC
CCCCAGAGGGGTGGAGGAACCTGATGTCATCTTCCAGAACTTCTTGCAACAGGCTGCAAGTAACCAGTTA
GACTCTTTGATGGGCCTGAGCAATTCACACCCTGTGGAGGAGAGCATCATTATCCCATGTGAATTCTGTG
GGGTACAGCTGGAAGAGGAGGTGCTGTTCCATCACCAGGACCAGTGTGACCAACGCCCAGCCACTGCAAC
CAACCATGTGACAGAGGGGATTCCTAGACTGGATTCCCAGCCTCAAGAGACCTCACCAGAGCTGCCCAGG
AGGCGTGTCAGACACCAGGGAGACCTGTCTTCTGGTTACCTGGATGATACTAAGCAGGAAACAGCTAATG
GGCCCACCTCCTGTCTGCCTCCCAGCCGACCCATTAACAATATGACAGCTACCTATAACCAGCTATCGAG
ATCAACATCAGGCCCCAGACCTGGGTGCCAGCCCAGCTCTCCTTGTGTGCCGAAGCTCAGCAACTCAGAC
AGCCAGGACATCCAGGGGCGGAATCGAGACAGCCAGAATGGGGCCATAGCCCCTGGGCACGTTTCAGTGA
TTCGCCCTCCTCAAAATCTCTACCCAGAAAACATTGTGCCCTCTTTCTCCCCTGGGCCTTCAGGGAGATA
CGGAGCTAGTGGTAGGAGTGAAGGTGGCAGGAATTCCCGGGTCACCCCTGCAGCTGCCAACTACCGCAGC
AGAACTGCAAAGGCAAAGCCTTCCAAGCAACAGGGAGCTGGGGATGCAGAAGAGGAAGAGGAGGAGTAA

Translation (582 aa):
MAEFLDDQETRLCDNCKKEIPVFNFTIHEIHCQRNIGMCPTCKEPFPKSDMETHMAAEHCQVTCKCNKKL
EKRLLKKHEETECPLRLAVCQHCDLELSILKLKEHEDYCGARTELCGNCGRNVLVKDLKTHPEVCGREGE
EKRNEVAIPPNAYDESWGQDGIWIASQLLRQIEALDPPMRLPRRPLRAFESDVFHNRTTNQRNITAQVSI
QNNLFEEQERQERNRGQQPPKEGGEESANLDFMLALSLQNEGQASSVAEQDFWRAVCEADQSHGGPRSLS
DIKGAADEIMLPCEFCEELYPEELLIDHQTSCNPSRALPSLNTGSSSPRGVEEPDVIFQNFLQQAASNQL
DSLMGLSNSHPVEESIIIPCEFCGVQLEEEVLFHHQDQCDQRPATATNHVTEGIPRLDSQPQETSPELPR
RRVRHQGDLSSGYLDDTKQETANGPTSCLPPSRPINNMTATYNQLSRSTSGPRPGCQPSSPCVPKLSNSD
SQDIQGRNRDSQNGAIAPGHVSVIRPPQNLYPENIVPSFSPGPSGRYGASGRSEGGRNSRVTPAAANYRS
RTAKAKPSKQQGAGDAEEEEEE


Links Key
 Links to:   History report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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