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Report for CCDS91290.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
91290.1 Public Homo sapiens 10 LDB3 24 110 108 CCDS HistoryNCBI Gene:11155Re-query CCDS DB by CCDS ID:91290.1Re-query CCDS DB by GeneID:11155See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 91290.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000693680.1 ENSP00000509539.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000693680.1Link to Ensembl Protein Viewer:ENSP00000509539.1Re-query CCDS DB by Nucleotide ID:ENST00000693680Re-query CCDS DB by Protein ID:ENSP00000509539
Original member Current member EBI ENST00000689740.1 ENSP00000510300.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000689740.1Link to Ensembl Protein Viewer:ENSP00000510300.1Re-query CCDS DB by Nucleotide ID:ENST00000689740Re-query CCDS DB by Protein ID:ENSP00000510300
Original member Current member NCBI NM_001368066.1 NP_001354995.1 Accepted alive Link to Nucleotide Sequence:NM_001368066.1Link to Protein Sequence:NP_001354995.1Re-query CCDS DB by Nucleotide ID:NM_001368066Re-query CCDS DB by Protein ID:NP_001354995Link to BLAST:NP_001354995.1

Chromosomal Locations for CCDS 91290.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 86668692 86668784 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86679367 86679518 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86680082 86680157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86685678 86685700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86687069 86687272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86691896 86692065 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86692535 86692571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86706531 86706719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86709905 86710050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86716327 86716771 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86717964 86718144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86718727 86718847 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86726137 86726252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 86732887 86732976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2043 nt):
ATGTCTTACAGTGTGACCCTGACTGGGCCCGGGCCCTGGGGCTTCCGTCTGCAGGGGGGCAAGGACTTCA
ACATGCCCCTCACTATCTCCCGGATCACACCAGGCAGCAAGGCAGCCCAGTCCCAGCTCAGCCAGGGTGA
CCTCGTGGTGGCCATTGACGGCGTCAACACAGACACCATGACCCACCTGGAAGCCCAGAACAAGATCAAG
TCTGCCAGCTACAACTTGAGCCTCACCCTGCAGAAATCAAAGCGTCCCATTCCCATCTCCACGACAGCAC
CTCCAGTCCAGACCCCTCTGCCGGTGATCCCTCACCAGAAGGTGGTAGTCAACTCTCCAGCCAACGCCGA
CTACCAGGAACGCTTCAACCCCAGTGCCCTGAAGGACTCGGCCCTGTCCACCCACAAGCCCATCGAGGTG
AAGGGGCTGGGCGGCAAGGCCACCATCATCCATGCGCAGTACAACACGCCCATCAGCATGTATTCCCAGG
ATGCCATCATGGATGCCATCGCTGGGCAGGCCCAAGCCCAAGGCAGTGACTTCAGTGGGAGCCTCCCTAT
TAAGGACCTTGCCGTAGACAGCGCCTCTCCCGTCTACCAGGCTGTGATTAAGAGCCAGAACAAGCCAGAA
GATGAGGCTGACGAGTGGGCACGCCGTTCCTCCAACCTGCAGTCTCGCTCCTTCCGCATCCTGGCCCAGA
TGACGGGGACAGAATTCATGCAAGACCCTGATGAAGAAGCTCTGCGAAGGTCAAGCACCCCTATTGAGCA
TGCGCCGGTGTGCACCAGCCAGGCCACCACCCCGCTGCTGCCCGCTTCTGCCCAGCCACCTGCTGCTGCC
TCTCCCAGTGCGGCTTCGCCACCCCTGGCCACAGCTGCTGCCCACACTGCCATCGCCTCCGCCTCCACCA
CAGCCCCTGCTTCAAGTCCTGCCGACAGCCCAAGGCCCCAGGCCTCTTCCTACAGCCCCGCAGTGGCCGC
CTCTTCAGCACCTGCCACCCACACCAGCTACAGTGAGGGCCCCGCCGCCCCTGCACCCAAGCCCCGGGTT
GTCACCACTGCCAGCATCCGGCCTTCTGTCTACCAGCCAGTGCCTGCATCTACCTACAGCCCGTCCCCAG
GGGCCAATTACAGTCCCACTCCCTACACCCCCTCCCCTGCCCCTGCCTACACCCCCTCCCCTGCCCCTGC
CTACACCCCCTCACCTGTCCCCACCTACACTCCATCCCCAGCACCAGCCTATACCCCCTCACCTGCCCCC
AACTATAACCCTGCACCCTCGGTGGCCTACAGCGGGGGCCCTGCGGAGCCTGCCAGCCGTCCACCCTGGG
TGACAGATGATAGCTTCTCCCAGAAGTTTGCCCCGGGCAAGAGCACCACCTCCATCAGCAAGCAGACCCT
GCCCCGGGGAGGCCCAGCCTACACCCCAGCGGGTCCTCAGGTGCCACCACTTGCCAGGGGGACCGTCCAG
AGGGCTGAGCGATTCCCAGCCAGCAGCCGGACTCCACTCTGCGGTCACTGCAACAATGTCATCCGGGGCC
CATTTCTGGTAGCCATGGGCCGTTCTTGGCACCCTGAAGAGTTCACCTGTGCCTACTGCAAGACTTCCCT
GGCAGATGTGTGCTTTGTGGAAGAGCAGAACAACGTTTACTGTGAGCGATGTTATGAGCAATTCTTTGCC
CCGCTGTGTGCCAAGTGCAACACCAAAATTATGGGGGAAGTAATGCATGCCTTGAGACAGACATGGCACA
CCACCTGCTTCGTCTGTGCGGCCTGCAAGAAGCCTTTTGGGAACAGCCTCTTCCACATGGAAGACGGGGA
GCCCTACTGCGAGAAAGACTACATCAATCTGTTCAGCACCAAGTGCCATGGCTGCGATTTCCCCGTGGAG
GCTGGCGACAAGTTTATCGAAGCCCTGGGCCACACTTGGCACGACACCTGCTTCATTTGCGCAGTCTGCC
ATGTGAATCTGGAGGGGCAGCCGTTCTACTCCAAGAAGGACAGACCCCTGTGCAAGAAGCACGCACACAC
CATCAACTTGTAG

Translation (680 aa):
MSYSVTLTGPGPWGFRLQGGKDFNMPLTISRITPGSKAAQSQLSQGDLVVAIDGVNTDTMTHLEAQNKIK
SASYNLSLTLQKSKRPIPISTTAPPVQTPLPVIPHQKVVVNSPANADYQERFNPSALKDSALSTHKPIEV
KGLGGKATIIHAQYNTPISMYSQDAIMDAIAGQAQAQGSDFSGSLPIKDLAVDSASPVYQAVIKSQNKPE
DEADEWARRSSNLQSRSFRILAQMTGTEFMQDPDEEALRRSSTPIEHAPVCTSQATTPLLPASAQPPAAA
SPSAASPPLATAAAHTAIASASTTAPASSPADSPRPQASSYSPAVAASSAPATHTSYSEGPAAPAPKPRV
VTTASIRPSVYQPVPASTYSPSPGANYSPTPYTPSPAPAYTPSPAPAYTPSPVPTYTPSPAPAYTPSPAP
NYNPAPSVAYSGGPAEPASRPPWVTDDSFSQKFAPGKSTTSISKQTLPRGGPAYTPAGPQVPPLARGTVQ
RAERFPASSRTPLCGHCNNVIRGPFLVAMGRSWHPEEFTCAYCKTSLADVCFVEEQNNVYCERCYEQFFA
PLCAKCNTKIMGEVMHALRQTWHTTCFVCAACKKPFGNSLFHMEDGEPYCEKDYINLFSTKCHGCDFPVE
AGDKFIEALGHTWHDTCFICAVCHVNLEGQPFYSKKDRPLCKKHAHTINL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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