NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS91160.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
91160.1 Public Homo sapiens 1 SUSD4 24 110 108 CCDS HistoryNCBI Gene:55061Re-query CCDS DB by CCDS ID:91160.1Re-query CCDS DB by GeneID:55061See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 91160.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000681285.1 ENSP00000505301.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000681285.1Link to Ensembl Protein Viewer:ENSP00000505301.1Re-query CCDS DB by Nucleotide ID:ENST00000681285Re-query CCDS DB by Protein ID:ENSP00000505301
Current member NCBI NM_001410929.1 NP_001397858.1 Accepted alive Link to Nucleotide Sequence:NM_001410929.1Link to Protein Sequence:NP_001397858.1Re-query CCDS DB by Nucleotide ID:NM_001410929Re-query CCDS DB by Protein ID:NP_001397858Link to BLAST:NP_001397858.1

Chromosomal Locations for CCDS 91160.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 223222192 223222220 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 223223249 223223631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 223227594 223227738 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 223229197 223229388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 223264630 223264818 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 223268502 223268675 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 223292439 223292651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 223296727 223296890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 223363278 223363460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 223364057 223364073 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1689 nt):
ATGCATGAGACCCACAGACTCTTGCAAGCTGGATGCCCTCTGTGGATGAAAGATGTATCATGGAATGAAC
CCGAGCAATGGAGATGGATTTCTAGAGCAGCAGCAGCAGCAGCAGCAACCTCAGTCCCCCCAGAGACTCT
TGGCCGTGATCCTGTGGTTTCAGCTGGCGCTGTGCTTCGGCCCTGCACAGCTCACGGGCGGACCGGGGTG
GCCTCAAGAAACTCACAATCATGGCAGAAGGGAAAGCAAACGCATCCTTCTTCACATGGCGGCAGCAAGG
AGAAGTGCAGAGAGAGAAGAAAGTCCCTTATAAAACCATCAGACCTCATGAGAACTCATTCACTATCACA
AGAACAGCATGGAGGGTTCGATGACCTTCAAGTGTGTGCTGACCCCGGCATTCCCGAGAATGGCTTCAGG
ACCCCCAGCGGAGGGGTTTTCTTTGAAGGCTCTGTAGCCCGATTTCACTGCCAAGACGGATTCAAGCTGA
AGGGCGCTACAAAGAGACTGTGTTTGAAGCATTTTAATGGAACCCTAGGCTGGATCCCAAGTGATAATTC
CATCTGTGTGCAAGAAGATTGCCGTATCCCTCAAATCGAAGATGCTGAGATTCATAACAAGACATATAGA
CATGGAGAGAAGCTAATCATCACTTGTCATGAAGGATTCAAGATCCGGTACCCCGACCTACACAATATGG
TTTCATTATGTCGCGATGATGGAACGTGGAATAATCTGCCCATCTGTCAAGGCTGCCTGAGACCTCTAGC
CTCTTCTAATGGCTATGTAAACATCTCTGAGCTCCAGACCTCCTTCCCGGTGGGGACTGTGATCTCCTAT
CGCTGCTTTCCCGGATTTAAACTTGATGGGTCTGCGTATCTTGAGTGCTTACAAAACCTTATCTGGTCGT
CCAGCCCACCCCGGTGCCTTGCTCTGGAAGTCTGTCCACTACCTCCAATGGTGAGTCACGGAGATTTCGT
CTGCCACCCGCGGCCTTGTGAGCGCTACAACCACGGAACTGTGGTGGAGTTTTACTGCGATCCTGGCTAC
AGCCTCACCAGCGACTACAAGTACATCACCTGCCAGTATGGAGAGTGGTTTCCTTCTTATCAAGTCTACT
GCATCAAATCAGAGCAAACGTGGCCCAGCACCCATGAGACCCTCCTGACCACGTGGAAGATTGTGGCGTT
CACGGCAACCAGTGTGCTGCTGGTGCTGCTGCTCGTCATCCTGGCCAGGATGTTCCAGACCAAGTTCAAG
GCCCACTTTCCCCCCAGGGGGCCTCCCCGGAGTTCCAGCAGTGACCCTGACTTTGTGGTGGTAGACGGCG
TGCCCGTCATGCTCCCGTCCTATGACGAAGCTGTGAGTGGCGGCTTGAGTGCCTTAGGCCCCGGGTACAT
GGCCTCTGTGGGCCAGGGCTGCCCCTTACCCGTGGACGACCAGAGCCCCCCAGCATACCCCGGCTCAGGG
GACACGGACACAGGCCCAGGGGAGTCAGAAACCTGTGACAGCGTCTCAGGCTCTTCTGAGCTGCTCCAAA
GTCTGTATTCACCTCCCAGGTGCCAAGAGAGCACCCACCCTGCTTCGGACAACCCTGACATAATTGCCAG
CACGGCAGAGGAGGTGGCATCCACCAGCCCAGGCATCGACATTGCAGATGAGATTCCTCTAATGGAAGAA
GATCCCTAA

Translation (562 aa):
MHETHRLLQAGCPLWMKDVSWNEPEQWRWISRAAAAAAATSVPPETLGRDPVVSAGAVLRPCTAHGRTGV
ASRNSQSWQKGKQTHPSSHGGSKEKCRERRKSLIKPSDLMRTHSLSQEQHGGFDDLQVCADPGIPENGFR
TPSGGVFFEGSVARFHCQDGFKLKGATKRLCLKHFNGTLGWIPSDNSICVQEDCRIPQIEDAEIHNKTYR
HGEKLIITCHEGFKIRYPDLHNMVSLCRDDGTWNNLPICQGCLRPLASSNGYVNISELQTSFPVGTVISY
RCFPGFKLDGSAYLECLQNLIWSSSPPRCLALEVCPLPPMVSHGDFVCHPRPCERYNHGTVVEFYCDPGY
SLTSDYKYITCQYGEWFPSYQVYCIKSEQTWPSTHETLLTTWKIVAFTATSVLLVLLLVILARMFQTKFK
AHFPPRGPPRSSSSDPDFVVVDGVPVMLPSYDEAVSGGLSALGPGYMASVGQGCPLPVDDQSPPAYPGSG
DTDTGPGESETCDSVSGSSELLQSLYSPPRCQESTHPASDNPDIIASTAEEVASTSPGIDIADEIPLMEE
DP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH