NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS9109.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9109.2 Public Homo sapiens 12 RIC8B 24 110 108 CCDS HistoryNCBI Gene:55188Re-query CCDS DB by CCDS ID:9109.2Re-query CCDS DB by GeneID:55188See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 9109.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000392839.6 ENSP00000376583.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000392839.6Link to Ensembl Protein Viewer:ENSP00000376583.2Re-query CCDS DB by Nucleotide ID:ENST00000392839Re-query CCDS DB by Protein ID:ENSP00000376583
Original member Current member NCBI NM_018157.4 NP_060627.2 Accepted alive Link to Nucleotide Sequence:NM_018157.4Link to Protein Sequence:NP_060627.2Re-query CCDS DB by Nucleotide ID:NM_018157Re-query CCDS DB by Protein ID:NP_060627Link to BLAST:NP_060627.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060627.2 520 Q9NVN3-5 520 100% 0 0

Chromosomal Locations for CCDS 9109.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 106774746 106774829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106783997 106784044 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106814696 106815304 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106825726 106825820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106842589 106842817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106843852 106843947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106851450 106851594 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106860268 106860412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 106885904 106886015 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1563 nt):
ATGGATGAGGAGCGCGCCCTCTACATCGTCCGGGCCGGCGAAGCAGGGGCTATCGAGCGGGTCCTGAGGG
ATTACAGCGACAAGCATAGGGCTACTTTCAAATTTGAATCAACAGATGAAGATAAAAGAAAGAAACTCTG
TGAAGGCATATTTAAAGTCCTTATAAAGGACATCCCAACAACATGTCAAGTGTCCTGCCTGGAAGTACTC
CGCATTCTCTCCAGAGACAAAAAGGTTTTAGTTCCTGTGACAACTAAGGAAAATATGCAGATACTGCTGC
GACTAGCCAAGCTAAATGAGTTAGATGATTCTTTGGAGAAAGTATCAGAGTTCCCAGTTATTGTGGAGTC
ATTAAAATGTCTGTGTAATATAGTGTTCAACAGTCAGATGGCACAGCAGCTCAGCCTGGAACTTAATCTT
GCTGCAAAGCTCTGTAACCTCCTGAGAAAGTGCAAGGACCGGAAATTTATCAATGACATTAAGTGCTTTG
ACTTGCGCTTGCTCTTCCTTCTGTCACTTTTGCACACCGACATCAGGTCACAATTGCGCTATGAGCTCCA
GGGACTACCGCTGCTAACGCAGATCTTGGAAAGTGCCTTTAGCATCAAGTGGACCGATGAGTATGAATCG
GCCATAGACCATAATGGACCTCCTCTCTCACCTCAGGAGACAGACTGTGCCATTGAGGCCCTCAAAGCTC
TCTTCAATGTGACGGTAGACAGTTGGAAGGTGCATAAAGAGAGTGATTCTCATCAGTTCCGTGTAATGGC
AGCTGTCCTTCGTCATTGTTTACTAATCGTAGGTCCAACTGAAGACAAAACAGAAGAGCTACACAGCAAT
GCAGTCAACCTTTTAAGCAATGTTCCAGTCTCTTGTTTGGATGTTCTCATTTGTCCGTTAACCCATGAAG
AAACAGCCCAAGAGGCAACGACTCTAGATGAACTGCCCAGTAATAAAACAGCTGAGAAAGAAACAGTTTT
GAAAAACAATACCATGGTATACAATGGTATGAATATGGAGGCCATTCATGTTTTACTGAATTTTATGGAG
AAGAGAATAGACAAGGGAAGCAGCTATAGAGAGGGTCTAACTCCAGTTCTCAGCTTATTAACCGAATGTT
CCCGAGCCCATCGAAACATCCGAAAATTTCTCAAAGATCAGGTTTTACCACCGTTGAGGGATGTGACAAA
TCGACCTGAAGTTGGCTCAACTGTGAGAAATAAGCTGGTGCGCCTCATGACACATGTTGACCTTGGAGTC
AAGCAAATTGCTGCTGAATTCCTTTTTGTCCTTTGCAAAGAGAGAGTGGATAGTCTGCTGAAATACACTG
GCTATGGGAATGCTGCAGGACTGTTGGCGGCCAGGGGCCTCTTGGCTGGAGGAAGAGGAGATAATTGGTA
CTCAGAGGATGAGGACACAGACACTGAAGAATACAAAAATGCAAAACCAAAAGAGGAGTTGCTTAAACCA
ATGGGACTAAAACCTGATGGGACAATAACGCCTTTGGAGGAAGCACTCAACCAGTACTCTGTCATCGAAG
AGACCAGCTCTGACACAGACTAA

Translation (520 aa):
MDEERALYIVRAGEAGAIERVLRDYSDKHRATFKFESTDEDKRKKLCEGIFKVLIKDIPTTCQVSCLEVL
RILSRDKKVLVPVTTKENMQILLRLAKLNELDDSLEKVSEFPVIVESLKCLCNIVFNSQMAQQLSLELNL
AAKLCNLLRKCKDRKFINDIKCFDLRLLFLLSLLHTDIRSQLRYELQGLPLLTQILESAFSIKWTDEYES
AIDHNGPPLSPQETDCAIEALKALFNVTVDSWKVHKESDSHQFRVMAAVLRHCLLIVGPTEDKTEELHSN
AVNLLSNVPVSCLDVLICPLTHEETAQEATTLDELPSNKTAEKETVLKNNTMVYNGMNMEAIHVLLNFME
KRIDKGSSYREGLTPVLSLLTECSRAHRNIRKFLKDQVLPPLRDVTNRPEVGSTVRNKLVRLMTHVDLGV
KQIAAEFLFVLCKERVDSLLKYTGYGNAAGLLAARGLLAGGRGDNWYSEDEDTDTEEYKNAKPKEELLKP
MGLKPDGTITPLEEALNQYSVIEETSSDTD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH