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Report for CCDS90974.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90974.1 Public Homo sapiens 1 LRRC7 24 110 108 CCDS HistoryNCBI Gene:57554Re-query CCDS DB by CCDS ID:90974.1Re-query CCDS DB by GeneID:57554See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90974.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000370958.5 ENSP00000359997.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000370958.5Link to Ensembl Protein Viewer:ENSP00000359997.1Re-query CCDS DB by Nucleotide ID:ENST00000370958Re-query CCDS DB by Protein ID:ENSP00000359997
Original member Current member NCBI NM_001366836.3 NP_001353765.1 Accepted alive Link to Nucleotide Sequence:NM_001366836.3Link to Protein Sequence:NP_001353765.1Re-query CCDS DB by Nucleotide ID:NM_001366836Re-query CCDS DB by Protein ID:NP_001353765Link to BLAST:NP_001353765.1

Chromosomal Locations for CCDS 90974.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 69568640 69568641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 69678381 69678478 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 69760191 69760393 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 69792043 69792160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 69825748 69825826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 69834780 69834869 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 69838227 69838283 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 69873467 69873473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (654 nt):
ATGATGGAGAACCTAATAAGGGGAAGGAATCCCCCGCAATACCAGAGAAGTCCTTGTAAAGAGGTTCGTG
CAGCACTTCGGAAGAGGCCTGAAGAGGAGTTGCAGTGCCTGGAGATGACCACCAAACGGAAAATCATCGG
CCGTCTGGTGCCATGCCGATGTTTCCGAGGTGAAGAAGAAATCATCTCAGTTTTAGATTACTCCCACTGC
AGTCTTCAGCAGGTGCCAAAGGAGGTCTTTAACTTCGAACGAACATTAGAGGAGCTTTATCTAGATGCCA
ATCAAATTGAAGAACTACCCAAGCAATTGTTCAACTGTCAAGCTCTACGAAAACTAAGTATTCCTGATAA
CGACCTTTCAAATCTGCCAACCACTATTGCTAGTTTAGTTAATCTTAAAGAACTCGACATCAGTAAAAAT
GGTGTACAAGAATTTCCAGAAAACATAAAGTGCTGTAAGTGTTTAACAATTATTGAAGCCAGTGTCAATC
CCATTTCTAAACTACCTGATGGCTTCACACAGCTCCTAAACCTGACCCAGCTCTACCTGAATGACGCCTT
TCTTGAATTTCTTCCAGCCAATTTTGGAAGACTTGTCAAATTGCGGATCTTGGAGTTAAGAGAAAATCAC
TTGAAAACTCTACCAAACATCTGA

Translation (217 aa):
MMENLIRGRNPPQYQRSPCKEVRAALRKRPEEELQCLEMTTKRKIIGRLVPCRCFRGEEEIISVLDYSHC
SLQQVPKEVFNFERTLEELYLDANQIEELPKQLFNCQALRKLSIPDNDLSNLPTTIASLVNLKELDISKN
GVQEFPENIKCCKCLTIIEASVNPISKLPDGFTQLLNLTQLYLNDAFLEFLPANFGRLVKLRILELRENH
LKTLPNI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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