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Report for CCDS90896.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90896.1 Public Homo sapiens 1 TAF12 24 110 108 CCDS HistoryNCBI Gene:6883Re-query CCDS DB by CCDS ID:90896.1Re-query CCDS DB by GeneID:6883See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90896.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000495422.2 ENSP00000508345.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000495422.2Link to Ensembl Protein Viewer:ENSP00000508345.1Re-query CCDS DB by Nucleotide ID:ENST00000495422Re-query CCDS DB by Protein ID:ENSP00000508345
Current member NCBI NM_001410769.1 NP_001397698.1 Accepted alive Link to Nucleotide Sequence:NM_001410769.1Link to Protein Sequence:NP_001397698.1Re-query CCDS DB by Nucleotide ID:NM_001410769Re-query CCDS DB by Protein ID:NP_001397698Link to BLAST:NP_001397698.1

Chromosomal Locations for CCDS 90896.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 28603539 28603574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28605372 28605460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28613247 28613361 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28617953 28618030 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28621914 28622165 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 28623946 28624017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (642 nt):
ATGGCTGCCTCTCATTTCACCGGGCTCACAGCTGTTGCTGATGTAATTAAAGATCTAGACACTCAGATAG
CTTTAATTGGCCTTGGTCCTCACAGCTCCAAAAAGAAACAGGATCTCGATAAGCTCTATGAGCTGAAGTC
CAAAGCTCGGCAGATTATGAACCAGTTTGGCCCCTCAGCCCTAATCAACCTCTCCAATTTCTCATCCATA
AAACCGGAACCAGCCAGCACCCCTCCACAAGGCTCCATGGCCAATAGTACTGCAGTGGTAAAGATACCAG
GCACTCCTGGGGCAGGAGGTCGTCTTAGCCCTGAAAACAATCAGGTATTGACCAAGAAGAAATTACAGGA
CTTAGTAAGAGAAGTGGATCCTAATGAGCAGTTGGATGAAGATGTGGAGGAGATGCTGCTGCAGATTGCT
GATGATTTTATCGAGAGTGTGGTGACAGCAGCCTGTCAGCTTGCGCGGCATCGCAAGTCTAGCACCCTGG
AGGTGAAAGATGTCCAGCTGCATTTAGAGCGCCAGTGGAACATGTGGATCCCAGGATTTGGCTCTGAAGA
AATCCGACCCTACAAAAAAGCTTGCACCACAGAAGCTCACAAACAGAGAATGGCATTGATCCGGAAAACA
ACCAAGAAATAA

Translation (213 aa):
MAASHFTGLTAVADVIKDLDTQIALIGLGPHSSKKKQDLDKLYELKSKARQIMNQFGPSALINLSNFSSI
KPEPASTPPQGSMANSTAVVKIPGTPGAGGRLSPENNQVLTKKKLQDLVREVDPNEQLDEDVEEMLLQIA
DDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQWNMWIPGFGSEEIRPYKKACTTEAHKQRMALIRKT
TKK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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