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Report for CCDS90853.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90853.1 Public Homo sapiens 1 CAMTA1 24 110 108 CCDS HistoryNCBI Gene:23261Re-query CCDS DB by CCDS ID:90853.1Re-query CCDS DB by GeneID:23261See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 24, NCBI annotation release 110, Ensembl annotation release 108

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90853.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000700423.1 ENSP00000514996.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000700423.1Link to Ensembl Protein Viewer:ENSP00000514996.1Re-query CCDS DB by Nucleotide ID:ENST00000700423Re-query CCDS DB by Protein ID:ENSP00000514996
Original member Current member NCBI NM_001349619.2 NP_001336548.1 Accepted alive Link to Nucleotide Sequence:NM_001349619.2Link to Protein Sequence:NP_001336548.1Re-query CCDS DB by Nucleotide ID:NM_001349619Re-query CCDS DB by Protein ID:NP_001336548Link to BLAST:NP_001336548.1
Original member Current member NCBI NM_001349620.1 NP_001336549.1 Accepted alive Link to Nucleotide Sequence:NM_001349620.1Link to Protein Sequence:NP_001336549.1Re-query CCDS DB by Nucleotide ID:NM_001349620Re-query CCDS DB by Protein ID:NP_001336549Link to BLAST:NP_001336549.1

Chromosomal Locations for CCDS 90853.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 7732462 7732599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 7736344 7736540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 7736931 7737009 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 7737255 7737570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 7738298 7738482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 7744835 7745022 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 7745845 7746091 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 7747710 7747781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 7749771 7749791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 7751199 7751392 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 7752459 7752533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 7755638 7755668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 7766459 7766491 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1776 nt):
ATGTCCATCCTGGAACGACTGGAGCAGATGGAGAGGAGGATGGCCGAGATGACGGGGTCCCAGCAGCACA
AA
CAGGCGAGCGGAGGCGGCAGCAGTGGAGGCGGCAGCGGGAGCGGGAATGGAGGGAGCCAGGCACAGTG
T
GCTTCTGGGACTGGGGCCTTGGGGAGCTGCTTTGAGAGCCGTGTGGTCGTGGTATGCGAGAAGATGATG
AGC
CGAGCCTGCTGGGCGAAGTCCAAGCACTTGATCCACTCAAAGACTTTCCGCGGAATGACCCTACTCC
AC
CTGGCCGCTGCCCAGGGCTATGCCACCCTAATCCAGACCCTCATCAAATGGCGTACAAAGCACGCGGA
T
AGCATTGACCTGGAACTGGAAGTTGACCCCTTGAATGTGGACCACTTCTCCTGTACTCCTCTGATGTGG
GCG
TGTGCCCTAGGGCACTTGGAAGCTGCCGTCGTGCTGTACAAGTGGGACCGTCGGGCCATCTCGATTC
CC
GACTCTCTAGGAAGGCTGCCTTTGGGAATTGCCAGGTCACGGGGTCATGTGAAATTAGCAGAGTGTCT
G
GAGCACCTGCAGAGAGATGAGCAGGCTCAGCTGGGACAGAACCCCAGAATCCACTGTCCTGCAAGCGAA
GAG
CCCAGCACAGAGAGCTGGATGGCCCAGTGGCACAGCGAAGCCATCAGCTCTCCAGAAATACCCAAGG
GA
GTCACTGTTATTGCAAGCACCAACCCAGTACAGGTGACTGGAAATCCGAAGGGGACCAGTGTAGGAAA
G
GAGGCAGCACCTTCACAGGTGCGTCCACGGGAACCAATGAGTGTCCTGATGATGGCTAACAGAGAGGTG
GTG
AATACAGAGCTGGGGTCCTACCGTGATAGTGCAGAAAATGAAGAATGCGGCCAGCCCATGGATGACA
TA
CAGGTGAACATGATGACCTTGGCAGAACACATTATTGAAGCCACACCTGACCGAATCAAGCAGGAGAA
T
TTTGTGCCCATGGAGTCCTCAGGATTGGAAAGAACAGACCCTGCCACCATTAGCAGTACAATGAGCTGG
CTG
GCCAGTTATCTAGCGGATGCTGACTGCCTTCCCAGTGCTGCCCAGATCCGAAGTGCATATAACGAGC
CT
CTAACCCCTTCTTCTAATACCAGCTTGAGCCCTGTTGGCTCTCCCGTCAGTGAAATCGCTTTCGAGAA
A
CCTAACCTTCCCTCCGCCGCGGATTGGTCAGAATTCCTGAGTGCATCTACCAGTGAGAAGGTAGAGAAT
GAG
TTTGCTCAGCTCACTCTGTCTGATCATGAACAGAGAGAACTCTATGAGGCTGCCAGGCTTGTCCAGA
CA
GCTTTCCGGAAATACAAGGGCCGACCCTTGCGGGAACAGCAAGAAGTAGCTGCTGCTGTTATTCAGCG
T
TGTTACAGAAAATATAAACAGCTGACATGGATAGCCTTGAAGTACGCACTTTATAAAAAGATGACACAG
GCT
GCCATCCTTATCCAGAGCAAATTCCGAAGTTACTATGAACAAAAAAAATTCCAGCAGAGCCGACGGG
CT
GCTGTGCTCATCCAAAAGTACTACCGAAGTTATAAGAAATGTGGCAAAAGACGGCAGGCTCGCCGGAC
G
GCTGTGATTGTACAACAGAAACTCAGGAGCAGTTTGCTAACCAAAAAGCAGGATCAAGCTGCTCGAAAA
ATA
ATGAGGTTTCTTCGCCGCTGTCGCCACAGCCCCCTGGTGGACCATAGGCTGTACAAAAGGAGTGAAA
GA
ATTGAAAAAGGCCAAGGAACTTGA


Translation (591 aa):
MSILERLEQMERRMAEMTGSQQHKQASGGGSSGGGSGSGNGGSQAQCASGTGALGSCFESRVVVVCEKMM
S
RACWAKSKHLIHSKTFRGMTLLHLAAAQGYATLIQTLIKW
RTKHADSIDLELEVDPLNVDHFSCTPLMW
A
CALGHLEAAVVLYKWDRRAISIPDSLGRLPLGIARSRGHVKLAECLEHLQRDEQAQLGQNPRIHCPASE
E
PSTESWMAQWHSEAISSPEIPKGVTVIASTNP
VQVTGNPKGTSVGKEAAPSQVRPREPMSVLMMANREV
V
NTELGSYRDSAENEECGQPMDDIQ
VNMMTLAEHIIEATPDRIKQENFVPMESSGLERTDPATISSTMSW
L
ASYLADADCLPSAAQI
RSAYNEPLTPSSNTSLSPVGSPVSEIAFEKPNLPSAADWSEFLSASTSEKVEN
E
FAQLTLSDHEQRELYEAARLVQTAFRKYK
GRPLREQQEVAAAVIQRCYRKYKQLTWIALKYALYKKMTQ
A
AILIQSKFRSYYEQKKFQQSRRAAVLIQKYYRSYKKCGKRRQARRTAVIVQQKL
RSSLLTKKQDQAARK
I
MRFLRRCRH
SPLVDHRLYKRSERIEKGQGT



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser