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Report for CCDS9077.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9077.1 Public Homo sapiens 12 SLC17A8 24 110 108 CCDS HistoryNCBI Gene:246213Re-query CCDS DB by CCDS ID:9077.1Re-query CCDS DB by GeneID:246213See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9077.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000323346.10 ENSP00000316909.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000323346.10Link to Ensembl Protein Viewer:ENSP00000316909.4Re-query CCDS DB by Nucleotide ID:ENST00000323346Re-query CCDS DB by Protein ID:ENSP00000316909
Original member Current member NCBI NM_139319.3 NP_647480.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_139319.3Link to Protein Sequence:NP_647480.1Re-query CCDS DB by Nucleotide ID:NM_139319Re-query CCDS DB by Protein ID:NP_647480Link to BLAST:NP_647480.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_647480.1 589 Q8NDX2-1 589 100% 0 0

Chromosomal Locations for CCDS 9077.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 100357392 100357492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100380701 100380953 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100391001 100391119 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100393369 100393483 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100396330 100396417 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100401777 100401863 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100402340 100402479 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100402596 100402745 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100404038 100404170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100412770 100412880 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100418029 100418156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 100419815 100420159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1770 nt):
ATGCCTTTTAAAGCATTTGATACCTTCAAAGAAAAAATTCTGAAACCTGGGAAGGAAGGAGTGAAGAACG
CCGTGGGAGATTCTTTGGGAATTTTACAAAGAAAAATCGATGGGACAACTGAGGAAGAAGATAACATTGA
GCTGAATGAAGAAGGAAGGCCGGTGCAGACGTCCAGGCCAAGCCCCCCACTCTGCGACTGCCACTGCTGC
GGCCTCCCCAAGCGTTACATCATTGCTATCATGAGTGGGCTGGGATTCTGCATTTCCTTTGGGATCCGGT
GCAATCTTGGAGTTGCCATTGTGGAAATGGTCAACAATAGCACCGTATATGTTGATGGAAAACCGGAAAT
TCAGACAGCACAGTTTAACTGGGATCCAGAAACAGTGGGCCTTATCCATGGATCTTTTTTCTGGGGCTAT
ATTATGACACAAATTCCAGGTGGTTTCATTTCAAACAAGTTTGCTGCTAACAGGGTCTTTGGAGCTGCCA
TCTTCTTAACATCGACTCTGAACATGTTTATTCCCTCTGCAGCCAGAGTGCATTACGGATGCGTCATGTG
TGTCAGAATTCTGCAAGGTTTAGTGGAGGGTGTGACCTACCCAGCCTGCCATGGGATGTGGAGTAAGTGG
GCACCACCTTTGGAGAGAAGCCGACTGGCCACAACCTCTTTTTGTGGTTCCTATGCAGGGGCAGTGGTTG
CCATGCCCCTGGCTGGGGTGTTGGTGCAGTACATTGGATGGTCCTCTGTCTTTTATATTTATGGCATGTT
TGGGATTATTTGGTACATGTTTTGGCTGTTGCAGGCCTATGAGTGCCCAGCAGCTCATCCAACAATATCC
AATGAGGAGAAGACCTATATAGAGACAAGCATAGGAGAGGGGGCCAACGTGGTTAGTCTAAGTAAATTTA
GTACCCCATGGAAAAGATTTTTCACATCTTTGCCGGTTTATGCAATCATTGTGGCAAATTTTTGCAGAAG
CTGGACCTTTTATTTGCTCCTCATAAGTCAGCCTGCTTATTTTGAAGAGGTCTTTGGATTTGCAATAAGT
AAGGTGGGTCTCTTGTCAGCAGTCCCACACATGGTTATGACAATCGTTGTACCTATTGGAGGACAATTGG
CTGATTATTTAAGAAGCAGACAAATTTTAACCACAACTGCTGTCAGAAAAATCATGAACTGTGGAGGTTT
TGGCATGGAGGCAACCTTACTCCTGGTGGTTGGCTTTTCGCATACCAAAGGGGTGGCTATCTCCTTTCTG
GTACTTGCTGTAGGATTTAGTGGCTTCGCTATTTCAGGTTTTAATGTCAACCACCTGGACATTGCCCCAC
GCTATGCCAGCATTCTCATGGGGATCTCAAACGGAGTGGGAACCCTCTCTGGAATGGTCTGTCCCCTCAT
TGTCGGTGCAATGACCAGGCACAAGACCCGTGAAGAATGGCAGAATGTGTTCCTCATAGCTGCCCTGGTG
CATTACAGTGGTGTGATCTTCTATGGGGTCTTTGCTTCTGGGGAGAAACAGGAGTGGGCTGACCCAGAGA
ATCTCTCTGAGGAGAAATGTGGAATCATTGACCAGGACGAATTAGCTGAGGAGATAGAACTCAACCATGA
GAGTTTTGCGAGTCCCAAAAAGAAGATGTCTTATGGAGCCACCTCCCAGAATTGTGAAGTCCAGAAGAAG
GAATGGAAAGGACAGAGAGGAGCGACCCTTGATGAGGAAGAGCTGACATCCTACCAGAATGAAGAGAGAA
ACTTCTCAACTATATCCTAA

Translation (589 aa):
MPFKAFDTFKEKILKPGKEGVKNAVGDSLGILQRKIDGTTEEEDNIELNEEGRPVQTSRPSPPLCDCHCC
GLPKRYIIAIMSGLGFCISFGIRCNLGVAIVEMVNNSTVYVDGKPEIQTAQFNWDPETVGLIHGSFFWGY
IMTQIPGGFISNKFAANRVFGAAIFLTSTLNMFIPSAARVHYGCVMCVRILQGLVEGVTYPACHGMWSKW
APPLERSRLATTSFCGSYAGAVVAMPLAGVLVQYIGWSSVFYIYGMFGIIWYMFWLLQAYECPAAHPTIS
NEEKTYIETSIGEGANVVSLSKFSTPWKRFFTSLPVYAIIVANFCRSWTFYLLLISQPAYFEEVFGFAIS
KVGLLSAVPHMVMTIVVPIGGQLADYLRSRQILTTTAVRKIMNCGGFGMEATLLLVVGFSHTKGVAISFL
VLAVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPLIVGAMTRHKTREEWQNVFLIAALV
HYSGVIFYGVFASGEKQEWADPENLSEEKCGIIDQDELAEEIELNHESFASPKKKMSYGATSQNCEVQKK
EWKGQRGATLDEEELTSYQNEERNFSTIS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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