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Report for CCDS90568.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90568.1 Public Mus musculus 9 Fdx1 23 108 98 CCDS HistoryNCBI Gene:14148Re-query CCDS DB by CCDS ID:90568.1Re-query CCDS DB by GeneID:14148See the combined annotation on chromosome 9 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90568.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000214013.1 ENSMUSP00000150434.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000214013.1Link to Ensembl Protein Viewer:ENSMUSP00000150434.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000214013Re-query CCDS DB by Protein ID:ENSMUSP00000150434
Original member Current member NCBI NM_001301728.1 NP_001288657.1 Accepted alive Link to Nucleotide Sequence:NM_001301728.1Link to Protein Sequence:NP_001288657.1Re-query CCDS DB by Nucleotide ID:NM_001301728Re-query CCDS DB by Protein ID:NP_001288657Link to BLAST:NP_001288657.1

Chromosomal Locations for CCDS 90568.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 9 (NC_000075.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9See the combined annotation on chromosome 9 in Sequence Viewer

Chromosome Start Stop Links
9 51947149 51947197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 51948577 51948706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 51957073 51957197 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9
9 51963271 51963467 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 9Link to Ensembl Genome Browser on chromosome 9

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (501 nt):
ATGGCGGCCGCTCCGGGCGCCCGACTCCTGCGCGCGGCCTGCGCCTCCGTCCCTTTCCGCGGCCTTGACC
GCTGTCGGCTGCTGGTCTGCGGGACCGGAGCGGGAACTGCCATCTCTCCGTGGACCCCGAGTCCCCGCCT
GCATGCAGAGGCCGGGCCCGGCCGGCCGCTGAGCGTGTCTGCGCGCGCGCGGAGCAGCTCAGAAGATAAG
ATAACAGTCCACTTCAAGAACCGAGATGGCGAGACGCTAACGACCAAGGGGAAAATTGGCGACTCTCTGC
TAGATGTTGTGATTGAGAACAACTTAGATATCGATGGGTTTGGTGCGTGTGAGGGAACGTTGGCTTGCTC
TACTTGTCATCTTATCTTTGAGGATCACATCTATGAGAAGTTAGATGCCATTACTGATGAAGAGAATGAC
ATGCTTGACCTGGCTTTTGGACTAACAGACAGGAACCTGGAAGACCCACCTATTTCCTTCAGCCCAGCAA
TTGGTCCCTGA

Translation (166 aa):
MAAAPGARLLRAACASVPFRGLDRCRLLVCGTGAGTAISPWTPSPRLHAEAGPGRPLSVSARARSSSEDK
ITVHFKNRDGETLTTKGKIGDSLLDVVIENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITDEEND
MLDLAFGLTDRNLEDPPISFSPAIGP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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