NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS90331.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90331.1 Public Mus musculus 7 Cdiptos 23 108 98 CCDS HistoryNCBI Gene:381922Re-query CCDS DB by CCDS ID:90331.1Re-query CCDS DB by GeneID:381922See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90331.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000205437.2 ENSMUSP00000148631.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000205437.2Link to Ensembl Protein Viewer:ENSMUSP00000148631.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000205437Re-query CCDS DB by Protein ID:ENSMUSP00000148631
Original member NCBI NM_001362232.1 NP_001349161.1 Updated not alive Link to Nucleotide Sequence:NM_001362232.1Link to Protein Sequence:NP_001349161.1Re-query CCDS DB by Nucleotide ID:NM_001362232Re-query CCDS DB by Protein ID:NP_001349161
Current member NCBI NM_001362232.2 NP_001349161.1 Accepted alive Link to Nucleotide Sequence:NM_001362232.2Link to Protein Sequence:NP_001349161.1Re-query CCDS DB by Nucleotide ID:NM_001362232Re-query CCDS DB by Protein ID:NP_001349161Link to BLAST:NP_001349161.1

Chromosomal Locations for CCDS 90331.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 126972872 126972907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126974453 126974510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126974679 126974712 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126974940 126975084 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 126975307 126975387 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (354 nt):
ATGGCATCCACATCTGCCAGGAGTGGGGACAAAAAGGACATCAGGTCATCTCAAGCTGCCGCCTCCTTAG
GTGGAGGGCAGAAATTATCCTGCTCTGAAGAATTCCTGACCCGAATCAGCACAGAACTTACAGACGAAGC
ACTGTTTATTGCTCGCTCCCGTTTGAGTCCTCTGCCCAATAAGGAAAAGAACACAAAAGACCAAGGGACT
CAGATATCTAGACATGTGTTCTTCACTAAGACCCGAGGCACTGACACCCGCTCTGACAAAAATCGAACCC
GAACCAAGGCACACCTTCTGCCATCTCCTCGTGAAAAGGGACCACTCCCCAACAGCCTGACAACTGGAGG
ATGA

Translation (117 aa):
MASTSARSGDKKDIRSSQAAASLGGGQKLSCSEEFLTRISTELTDEALFIARSRLSPLPNKEKNTKDQGT
QISRHVFFTKTRGTDTRSDKNRTRTKAHLLPSPREKGPLPNSLTTGG


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH