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Report for CCDS9027.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9027.1 Public Homo sapiens 12 SLC6A15 24 110 108 CCDS HistoryNCBI Gene:55117Re-query CCDS DB by CCDS ID:9027.1Re-query CCDS DB by GeneID:55117See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9027.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000450363.4 ENSP00000390706.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000450363.4Link to Ensembl Protein Viewer:ENSP00000390706.2Re-query CCDS DB by Nucleotide ID:ENST00000450363Re-query CCDS DB by Protein ID:ENSP00000390706
Original member Current member EBI ENST00000681688.1 ENSP00000505731.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000681688.1Link to Ensembl Protein Viewer:ENSP00000505731.1Re-query CCDS DB by Nucleotide ID:ENST00000681688Re-query CCDS DB by Protein ID:ENSP00000505731
Original member Current member NCBI NM_018057.7 NP_060527.2 Accepted alive Link to Nucleotide Sequence:NM_018057.7Link to Protein Sequence:NP_060527.2Re-query CCDS DB by Nucleotide ID:NM_018057Re-query CCDS DB by Protein ID:NP_060527Link to BLAST:NP_060527.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_060527.2 289 Q9H2J7-2 289 100% 0 0

Chromosomal Locations for CCDS 9027.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 84883745 84884040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84885435 84885561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84885911 84886068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84891832 84892120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (870 nt):
ATGCCCAAAAATAGCAAGGTGGTAAAAAGAGAATTAGATGATGATGTTACTGAGTCTGTCAAAGACCTTC
TTTCCAATGAAGACGCAGCTGATGATGCTTTTAAGACAAGTGAACTAATTGTTGATGGCCAGGAAGAGAA
AGATACAGATGTTGAAGAAGGATCTGAAGTCGAAGATGAAAGACCAGCTTGGAACAGTAAACTACAATAC
ATCCTGGCCCAAGTTGGATTTTCTGTAGGTTTAGGAAATGTGTGGCGATTTCCATACCTATGTCAGAAGA
ATGGGGGCGGTGCATATCTTTTACCATATTTAATACTACTTATGGTAATAGGTATTCCCCTTTTTTTCTT
GGAACTCTCTGTGGGTCAAAGAATTCGGCGAGGCAGCATTGGTGTATGGAATTACATAAGCCCTAAACTG
GGCGGGATTGGATTTGCAAGTTGTGTAGTGTGCTATTTTGTAGCTCTCTACTACAACGTCATCATTGGCT
GGAGTTTGTTTTATTTTTCTCAGTCTTTTCAGCAACCCCTGCCTTGGGATCAGTGTCCTTTGGTGAAAAA
TGCTTCACACACTTTTGTAGAACCAGAATGTGAACAAAGTTCTGCCACCACCTATTACTGGTACAGGGAA
GCACTGAATATTTCAAGTTCCATTTCTGAAAGTGGGGGCTTAAACTGGAAGATGACCATCTGCTTGTTGG
CTGCCTGGGTCATGGTTTGCTTGGCTATGATCAAAGGCATTCAGTCTTCTGGAAAAGTTAGTATGTTAGA
GCCCTTCCTCATTCTGCTAATCACCATTTCTGGATTCATCCCTCTCTCAAATTCTGTTACAGATTTCTGT
GGGCAAATCACACATAACACTTCATTCTAG

Translation (289 aa):
MPKNSKVVKRELDDDVTESVKDLLSNEDAADDAFKTSELIVDGQEEKDTDVEEGSEVEDERPAWNSKLQY
ILAQVGFSVGLGNVWRFPYLCQKNGGGAYLLPYLILLMVIGIPLFFLELSVGQRIRRGSIGVWNYISPKL
GGIGFASCVVCYFVALYYNVIIGWSLFYFSQSFQQPLPWDQCPLVKNASHTFVEPECEQSSATTYYWYRE
ALNISSSISESGGLNWKMTICLLAAWVMVCLAMIKGIQSSGKVSMLEPFLILLITISGFIPLSNSVTDFC
GQITHNTSF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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