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Report for CCDS9026.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
9026.1 Public Homo sapiens 12 SLC6A15 24 110 108 CCDS HistoryNCBI Gene:55117Re-query CCDS DB by CCDS ID:9026.1Re-query CCDS DB by GeneID:55117See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 9026.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000266682.10 ENSP00000266682.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000266682.10Link to Ensembl Protein Viewer:ENSP00000266682.5Re-query CCDS DB by Nucleotide ID:ENST00000266682Re-query CCDS DB by Protein ID:ENSP00000266682
Original member Current member EBI ENST00000681721.1 ENSP00000505286.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000681721.1Link to Ensembl Protein Viewer:ENSP00000505286.1Re-query CCDS DB by Nucleotide ID:ENST00000681721Re-query CCDS DB by Protein ID:ENSP00000505286
Original member Current member EBI ENST00000680963.1 ENSP00000505485.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000680963.1Link to Ensembl Protein Viewer:ENSP00000505485.1Re-query CCDS DB by Nucleotide ID:ENST00000680963Re-query CCDS DB by Protein ID:ENSP00000505485
Original member Current member EBI ENST00000681106.1 ENSP00000505789.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000681106.1Link to Ensembl Protein Viewer:ENSP00000505789.1Re-query CCDS DB by Nucleotide ID:ENST00000681106Re-query CCDS DB by Protein ID:ENSP00000505789
Original member Current member NCBI NM_182767.6 NP_877499.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_182767.6Link to Protein Sequence:NP_877499.1Re-query CCDS DB by Nucleotide ID:NM_182767Re-query CCDS DB by Protein ID:NP_877499Link to BLAST:NP_877499.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_877499.1 730 Q9H2J7-1 730 100% 0 0

Chromosomal Locations for CCDS 9026.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 84861632 84862006 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84863439 84863601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84867034 84867193 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84870478 84870670 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84872602 84872794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84873087 84873328 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84876497 84876607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84883859 84884040 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84885435 84885561 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84885911 84886068 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 84891832 84892120 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2193 nt):
ATGCCCAAAAATAGCAAGGTGGTAAAAAGAGAATTAGATGATGATGTTACTGAGTCTGTCAAAGACCTTC
TTTCCAATGAAGACGCAGCTGATGATGCTTTTAAGACAAGTGAACTAATTGTTGATGGCCAGGAAGAGAA
AGATACAGATGTTGAAGAAGGATCTGAAGTCGAAGATGAAAGACCAGCTTGGAACAGTAAACTACAATAC
ATCCTGGCCCAAGTTGGATTTTCTGTAGGTTTAGGAAATGTGTGGCGATTTCCATACCTATGTCAGAAGA
ATGGGGGCGGTGCATATCTTTTACCATATTTAATACTACTTATGGTAATAGGTATTCCCCTTTTTTTCTT
GGAACTCTCTGTGGGTCAAAGAATTCGGCGAGGCAGCATTGGTGTATGGAATTACATAAGCCCTAAACTG
GGCGGGATTGGATTTGCAAGTTGTGTAGTGTGCTATTTTGTAGCTCTCTACTACAACGTCATCATTGGCT
GGAGTTTGTTTTATTTTTCTCAGTCTTTTCAGCAACCCCTGCCTTGGGATCAGTGTCCTTTGGTGAAAAA
TGCTTCACACACTTTTGTAGAACCAGAATGTGAACAAAGTTCTGCCACCACCTATTACTGGTACAGGGAA
GCACTGAATATTTCAAGTTCCATTTCTGAAAGTGGGGGCTTAAACTGGAAGATGACCATCTGCTTGTTGG
CTGCCTGGGTCATGGTTTGCTTGGCTATGATCAAAGGCATTCAGTCTTCTGGAAAAATCATATATTTTAG
TTCTCTGTTTCCATATGTGGTACTTATTTGCTTCCTCATCAGAGCATTCCTTTTAAATGGTTCAATTGAT
GGCATTCGCCACATGTTTACCCCTAAGCTTGAAATAATGCTGGAGCCCAAGGTCTGGAGAGAAGCTGCTA
CTCAAGTGTTCTTTGCCTTAGGTCTGGGATTTGGTGGTGTCATTGCCTTTTCAAGCTACAACAAGAGAGA
CAACAACTGCCACTTTGATGCTGTCCTGGTGTCCTTCATCAATTTTTTCACTTCTGTCCTGGCAACATTG
GTGGTGTTTGCAGTTCTGGGCTTCAAAGCAAATGTCATAAATGAGAAATGCATTACACAAAATTCAGAGA
CGATCATGAAATTTTTGAAAATGGGGAACATTAGTCAGGATATTATTCCCCATCATATCAACCTTTCAAC
TGTTACTGCAGAAGATTATCATTTAGTTTATGACATCATTCAAAAAGTGAAAGAAGAAGAGTTTCCTGCT
CTTCATCTCAATTCCTGTAAAATTGAAGAAGAGCTAAATAAAGCTGTTCAGGGGACCGGCTTAGCTTTTA
TTGCCTTTACAGAAGCGATGACACATTTTCCTGCATCTCCCTTCTGGTCAGTGATGTTTTTCCTCATGCT
GGTCAATCTAGGCCTTGGCAGTATGTTTGGAACCATTGAAGGGATTGTCACGCCTATTGTGGACACTTTC
AAAGTGAGGAAAGAAATTCTTACTGTTATCTGTTGTCTTCTGGCATTTTGTATTGGCCTGATATTTGTGC
AACGCTCTGGAAATTACTTTGTTACAATGTTTGATGATTATTCTGCTACACTGCCTCTGCTAATTGTAGT
CATTTTGGAGAATATTGCTGTATGCTTTGTTTATGGCATAGATAAGTTTATGGAAGACCTAAAAGATATG
CTGGGCTTTGCTCCCAGCAGATATTACTACTATATGTGGAAATATATTTCTCCTCTAATGCTATTATCAT
TGCTAATAGCTAGTGTTGTGAATATGGGATTAAGTCCTCCTGGCTATAACGCATGGATTGAAGATAAGGC
ATCTGAAGAATTTCTGAGCTATCCAACATGGGGACTGGTTGTTTGTGTCTCTCTGGTTGTCTTTGCAATA
CTCCCAGTCCCTGTAGTTTTCATTGTTCGTCGCTTCAACCTTATAGATGATAGTTCTGGTAATTTAGCAT
CTGTGACCTATAAGAGAGGAAGGGTCCTGAAAGAGCCTGTGAACTTAGAGGGCGATGATACAAGCCTCAT
TCACGGAAAAATACCGAGCGAGATGCCATCTCCAAATTTTGGTAAAAATATTTATCGAAAACAGAGTGGA
TCCCCAACTCTGGATACTGCTCCCAATGGACGGTATGGAATAGGGTACTTGATGGCAGATATTATGCCAG
ATATGCCAGAATCTGATTTGTAG

Translation (730 aa):
MPKNSKVVKRELDDDVTESVKDLLSNEDAADDAFKTSELIVDGQEEKDTDVEEGSEVEDERPAWNSKLQY
ILAQVGFSVGLGNVWRFPYLCQKNGGGAYLLPYLILLMVIGIPLFFLELSVGQRIRRGSIGVWNYISPKL
GGIGFASCVVCYFVALYYNVIIGWSLFYFSQSFQQPLPWDQCPLVKNASHTFVEPECEQSSATTYYWYRE
ALNISSSISESGGLNWKMTICLLAAWVMVCLAMIKGIQSSGKIIYFSSLFPYVVLICFLIRAFLLNGSID
GIRHMFTPKLEIMLEPKVWREAATQVFFALGLGFGGVIAFSSYNKRDNNCHFDAVLVSFINFFTSVLATL
VVFAVLGFKANVINEKCITQNSETIMKFLKMGNISQDIIPHHINLSTVTAEDYHLVYDIIQKVKEEEFPA
LHLNSCKIEEELNKAVQGTGLAFIAFTEAMTHFPASPFWSVMFFLMLVNLGLGSMFGTIEGIVTPIVDTF
KVRKEILTVICCLLAFCIGLIFVQRSGNYFVTMFDDYSATLPLLIVVILENIAVCFVYGIDKFMEDLKDM
LGFAPSRYYYYMWKYISPLMLLSLLIASVVNMGLSPPGYNAWIEDKASEEFLSYPTWGLVVCVSLVVFAI
LPVPVVFIVRRFNLIDDSSGNLASVTYKRGRVLKEPVNLEGDDTSLIHGKIPSEMPSPNFGKNIYRKQSG
SPTLDTAPNGRYGIGYLMADIMPDMPESDL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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