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Report for CCDS9013.1 (current version)
CCDS |
Status |
Species |
Chrom. |
Gene |
CCDS Release |
NCBI Annotation Release |
Ensembl Annotation Release |
Links |
9013.1 |
Public |
Homo sapiens |
12 |
NAP1L1 |
24 |
110 |
108 |
![CCDS History](IMG/ccds-History.jpg) ![](/corehtml/transparent.gif) ![NCBI Gene:4673](IMG/ccds-Gene.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by CCDS ID:9013.1](IMG/ccds-Cquery.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by GeneID:4673](IMG/ccds-Gquery.jpg) ![](/corehtml/transparent.gif) ![See the combined annotation on chromosome 12 in Sequence Viewer](IMG/ccds-SeqViewer.jpg) ![](/corehtml/transparent.gif) |
Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23
Review status: Reviewed (by RefSeq and Havana) Sequence IDs included in CCDS 9013.1
Original |
Current |
Source |
Nucleotide ID |
Protein ID |
MANE |
Status in CCDS |
Seq. Status |
Links |
---|
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000393263.7 |
ENSP00000376947.3 |
|
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000393263.7](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000376947.3](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000393263](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000376947](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
EBI |
ENST00000618691.5 |
ENSP00000477538.1 |
MANE Select |
Accepted |
alive |
![Link to Ensembl Transcript Viewer:ENST00000618691.5](IMG/ccds-Nucleotide.jpg) ![Link to Ensembl Protein Viewer:ENSP00000477538.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:ENST00000618691](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:ENSP00000477538](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_001330231.2 |
NP_001317160.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_001330231.2](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_001317160.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_001330231](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_001317160](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_001317160.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_004537.7 |
NP_004528.1 |
MANE Select |
Accepted |
alive |
![Link to Nucleotide Sequence:NM_004537.7](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_004528.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_004537](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_004528](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_004528.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
![Original member](IMG/ccds-Check.jpg) |
![Current member](IMG/ccds-Check.jpg) |
NCBI |
NM_139207.5 |
NP_631946.1 |
|
Accepted |
alive |
![Link to Nucleotide Sequence:NM_139207.5](IMG/ccds-Nucleotide.jpg) ![Link to Protein Sequence:NP_631946.1](IMG/ccds-Protein.jpg) ![](/corehtml/transparent.gif) ![Re-query CCDS DB by Nucleotide ID:NM_139207](IMG/ccds-Nquery.jpg) ![Re-query CCDS DB by Protein ID:NP_631946](IMG/ccds-Pquery.jpg) ![](/corehtml/transparent.gif) ![Link to BLAST:NP_631946.1](IMG/ccds-BLAST.jpg) ![](/corehtml/transparent.gif) |
Chromosomal Locations for CCDS 9013.1
Assembly GRCh38.p14 (GCF_000001405.40)
CCDS Sequence Data |
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Blue highlighting indicates alternating exons. | Red highlighting indicates amino acids encoded across a splice junction. | | Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. |
Nucleotide Sequence (1176 nt): ATGGCAGACATTGACAACAAAGAACAGTCTGAACTTGATCAAGATTTGGATGATGTTGAAGAAGTAGAAG AAGAGGAAACTGGTGAAGAAACAAAACTCAAAGCACGTCAGCTAACTGTTCAGATGATGCAAAATCCTCA GATTCTTGCAGCCCTTCAAGAAAGACTTGATGGTCTGGTAGAAACACCAACAGGATACATTGAAAGCCTG CCTAGGGTAGTTAAAAGACGAGTGAATGCTCTCAAAAACCTGCAAGTTAAATGTGCACAGATAGAAGCCA AATTCTATGAGGAAGTTCACGATCTTGAAAGGAAGTATGCTGTTCTCTATCAGCCTCTATTTGATAAGCG ATTTGAAATTATTAATGCAATTTATGAACCTACGGAAGAAGAATGTGAATGGAAACCAGATGAAGAAGAT GAGATTTCGGAGGAATTGAAAGAAAAGGCCAAGATTGAAGATGAGAAAAAAGATGAAGAAAAAGAAGACC CCAAAGGAATTCCTGAATTTTGGTTAACTGTTTTTAAGAATGTTGACTTGCTCAGTGATATGGTTCAGGA ACACGATGAACCTATTCTGAAGCACTTGAAAGATATTAAAGTGAAGTTCTCAGATGCTGGCCAGCCTATG AGTTTTGTCTTAGAATTTCACTTTGAACCCAATGAATATTTTACAAATGAAGTGCTGACAAAGACATACA GGATGAGGTCAGAACCAGATGATTCTGATCCCTTTTCTTTTGATGGACCAGAAATTATGGGTTGTACAGG GTGCCAGATAGATTGGAAAAAAGGAAAGAATGTCACTTTGAAAACTATTAAGAAGAAGCAGAAACACAAG GGACGTGGGACAGTTCGTACTGTGACTAAAACAGTTTCCAATGACTCTTTCTTTAACTTTTTTGCCCCTC CTGAAGTTCCTGAGAGTGGAGATCTGGATGATGATGCTGAAGCTATCCTTGCTGCAGACTTCGAAATTGG TCACTTTTTACGTGAGCGTATAATCCCAAGATCAGTGTTATATTTTACTGGAGAAGCTATTGAAGATGAT GATGATGATTATGATGAAGAAGGTGAAGAAGCGGATGAGGAAGGGGAAGAAGAAGGAGATGAGGAAAATG ATCCAGACTATGACCCAAAGAAGGATCAAAACCCAGCAGAGTGCAAGCAGCAGTGA
Translation (391 aa): MADIDNKEQSELDQDLDDVEEVEEEETGEETKLKARQLTVQMMQNPQILAALQERLDGLVETPTGYIESL PRVVKRRVNALKNLQVKCAQIEAKFYEEVHDLERKYAVLYQPLFDKRFEIINAIYEPTEEECEWKPDEED EISEELKEKAKIEDEKKDEEKEDPKGIPEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIKVKFSDAGQPM SFVLEFHFEPNEYFTNEVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKGKNVTLKTIKKKQKHK GRGTVRTVTKTVSNDSFFNFFAPPEVPESGDLDDDAEAILAADFEIGHFLRERIIPRSVLYFTGEAIEDD DDDYDEEGEEADEEGEEEGDEENDPDYDPKKDQNPAECKQQ
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