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Report for CCDS90105.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
90105.1 Public Mus musculus 6 Tmcc1 23 108 98 CCDS HistoryNCBI Gene:330401Re-query CCDS DB by CCDS ID:90105.1Re-query CCDS DB by GeneID:330401See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 90105.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000172510.3 ENSMUSP00000133665.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000172510.3Link to Ensembl Protein Viewer:ENSMUSP00000133665.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000172510Re-query CCDS DB by Protein ID:ENSMUSP00000133665
Original member Current member EBI ENSMUST00000173140.3 ENSMUSP00000134455.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000173140.3Link to Ensembl Protein Viewer:ENSMUSP00000134455.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000173140Re-query CCDS DB by Protein ID:ENSMUSP00000134455
Original member Current member NCBI NM_001364577.1 NP_001351506.1 Accepted alive Link to Nucleotide Sequence:NM_001364577.1Link to Protein Sequence:NP_001351506.1Re-query CCDS DB by Nucleotide ID:NM_001364577Re-query CCDS DB by Protein ID:NP_001351506Link to BLAST:NP_001351506.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001351506.1 329 Q69ZZ6-3 329 100% 0 0

Chromosomal Locations for CCDS 90105.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 116022087 116022401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116024802 116024937 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 116042871 116043409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (990 nt):
ATGCACCAGGGTCTGAAGGATGTGGGTGCAAAGGTGACTGGCTTCAGTGAAGGTGTAGTGGACAGCGTCA
AAGGTGGATTTTCCAGCTTCTCCCAGGCTACCCATTCAGCAGCAGGGGCTGTCGTCTCCAAACCCAGAGA
GATTGCCTCACTGATTCGGAACAAATTTGGTAGTGCAGACAATATCCCTAACCTGAAAGACTCATTAGAG
GAAGGACAAGTGGATGATGGGGGAAAGGCTTTAGGGGTGATTTCAAACTTTCAGTCAAGTCCAAAATATG
GTAGTGAGGAAGATTGTTCTAGTGCCACTTCAGGCTCAGTAGGAGCCAACAGTACCACTGGGGGCATTGC
TGTGGGAGCATCCAGCTCCAAAACCAACACCCTCGACATGCAGAGCTCAGGGTTTGATGCACTGCTGCAT
GAGGTCCAGGAGATCCGGGAAACCCAGGCCAGACTGGAGGACTCCTTCGAGACCCTCAAGGAGCATTATC
AGAGGGACTACTCCTTAATAATGCAGACCTTACAGGAAGAGCGGTATAGATGTGAGCGACTGGAAGAGCA
GCTGAATGACCTGACAGAGCTGCACCAGAATGAGATCCTGAACTTAAAGCAGGAGTTGGCCAGCATGGAA
GAGAAAATCGCCTATCAGTCATATGAACGGGCCCGGGATATCCAGGAGGCTCTGGAGGCCTGTCAAACCC
GCATTTCCAAGATGGAGCTGCAGCAGCAACAGCAGCAGGTGGTGCAACTGGAAGGGCTGGAGAATGCCAC
TGCCCGAAACCTTCTGGGCAAACTCATCAATATCCTCCTTGCTGTCATGGCAGTTCTCTTGGTCTTTGTG
TCAACAGTAGCCAACTGTGTGGTCCCCCTCATGAAGACACGCAACAGGACGTTCAGCACTTTATTCCTAG
TGGCTTTCATTGCCTTTCTTTGGAAGCACTGGGATGCCCTCTTTAGCTACGTGGACCGGCTCTTCTCACC
CCCCAGATGA

Translation (329 aa):
MHQGLKDVGAKVTGFSEGVVDSVKGGFSSFSQATHSAAGAVVSKPREIASLIRNKFGSADNIPNLKDSLE
EGQVDDGGKALGVISNFQSSPKYGSEEDCSSATSGSVGANSTTGGIAVGASSSKTNTLDMQSSGFDALLH
EVQEIRETQARLEDSFETLKEHYQRDYSLIMQTLQEERYRCERLEEQLNDLTELHQNEILNLKQELASME
EKIAYQSYERARDIQEALEACQTRISKMELQQQQQQVVQLEGLENATARNLLGKLINILLAVMAVLLVFV
STVANCVVPLMKTRNRTFSTLFLVAFIAFLWKHWDALFSYVDRLFSPPR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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