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Report for CCDS89878.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89878.1 Public Mus musculus 5 Elapor2 23 108 98 CCDS HistoryNCBI Gene:231014Re-query CCDS DB by CCDS ID:89878.1Re-query CCDS DB by GeneID:231014See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89878.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000134991.7 ENSMUSP00000121757.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000134991.7Link to Ensembl Protein Viewer:ENSMUSP00000121757.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000134991Re-query CCDS DB by Protein ID:ENSMUSP00000121757
Original member Current member NCBI NM_001359884.1 NP_001346813.1 Accepted alive Link to Nucleotide Sequence:NM_001359884.1Link to Protein Sequence:NP_001346813.1Re-query CCDS DB by Nucleotide ID:NM_001359884Re-query CCDS DB by Protein ID:NP_001346813Link to BLAST:NP_001346813.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001346813.1 1014 Q3UZV7-2 1014 100% 0 0

Chromosomal Locations for CCDS 89878.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 9266271 9266456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 9380278 9380398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 9399181 9399376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 9410584 9410731 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 9417985 9418071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 9420617 9420722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 9421505 9421657 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 9422302 9422390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 9427690 9427870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 9428405 9428533 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 9434621 9434711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 9435327 9435429 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 9437706 9437843 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 9440720 9440983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 9441634 9441807 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 9445364 9445553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 9446894 9446990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 9447720 9447821 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 9459180 9459306 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 9461322 9461500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 9462869 9463052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3045 nt):
ATGCTGCTGCTCACCCTGCGGCGGGCGAAAGGCAGGGATCGGGGGCGACCGGCCGGGGGTCCCCGCCGCG
CGCTCTCGCTGCCCTGGAGCCCCGCCTGGATTTGCTGCTGGGCGCTCGCAGGCTGCCAGGCAGTTTGGGC
TGGAGACTCGTCCTCCTCTGGCCGCCCGCTTCCTGCGTGCCAAGAGAAAGATTACCACTTTGAATATACA
GAATGTGATAGCACTGGCTCCAGGTGGAGGGTCGCCATTCCGAATTCTGCAGTGGATTGCTCTGGCCTGC
CTGACCCAGTGAAAGGCAAAGAATGCACTTTCTCCTGTGCTTCTGGAGAGTATCTAGAAATGAAGAACCA
GGTATGCAGTAAATGTGTGGAAGGCACCTACTCCTTGGGCAGTGGCATCAAATTTGATGAATGGGATGAA
TTGCCGGCAGGATTTTCCAACGTTGCAACATTCATGGACACTGTGGTGGGCCCTTCTGACAGCAGGCCAG
ATGGCTGTAACAACTCTTCTTGGCTTCCTCGTGGGAACTATATAGAGTCTAACCGTGATGACTGCACTGT
GTCTTTGATCTACGCTGTGCACCTGAAGAAGTCTGGCTACGTCTTCTTTGAGTACCAGTACGTGGACAAC
AACATCTTCTTTGAGTTCTTTATTCAGAATGACCAGTGCCAGGAGATGGATGCCACCACAGACAAGTGGG
TGAAGCTCACAGACAATGGAGAATGGGGCTCCCATTCTGTAATGCTGAAATCAGGCACAAATATTCTGTA
CTGGAGAACGACAGGCATCCTTATGGGTTCTAAGGCAGTCAAGCCCGTGCTAGTAAAGAATATCACCATC
GAAGGGGTGGCATACACCTCAGAGTGCTTTCCATGTAAGCCAGGCACTTTCAGCAACAAACCAGGCTCAT
TTAACTGCCAGATGTGTCCCAGAAACACCTATTCTGAGAAGGGTGCTAAAGAATGTATTAGGTGTAAGGA
GGACTCCCAGTTTTCAGAGGAAGGAGCCAGTGAGTGTGTGGATCGCCCACCCTGCACTACCAAAGACTAT
TTCCAGATCCATACCCCCTGTGACGAAGAAGGGAAGACACAGATAATGTACAAGTGGATAGAGCCAAAAA
TCTGCAGGGAGGATCTCACAGATGCTATTAGGCTGCCCCCTTCTGGAGAGAAGAAGGATTGTCCTCCTTG
CAACCCAGGATTCTATAACAATGGATCGTCTTCTTGCCATCCCTGCCCTCCGGGGACGTTTTCAGATGGA
ACAAAGGAATGCAAGTCATGTCCGGCCGGAACAGAGCCAGCACTTGGGTTTGAATATAAATGGTGGAATG
TCCTCCCTGCCAACATGAAAACTTCCTGCTTCAATGTTGGGAATTCCAAGTGCGATGGAATGAACGGTTG
GGAGGTGGCTGGAGATCACATCCGGAGTGGAGCTGGAGGCTCTGACAATGACTATCTCATCTTAAACTTG
CACATCCCAGGATTTAAACCACCAACGTCTATGACTGGAGCCACAGGTTCGGAACTGGGAAGGATAACAT
TTGTGTTTGAGACTCTCTGCTCAGCTGACTGTGTTTTGTACTTCATGGTGGATATAAATAGAAAAAGCAC
CAATGTGGTGGAATCATGGGGAGGAACCAAAGAAAAGCAAGCTTATACGCATGTCATATTCAAGAATGCA
ACGTTTACATTTACATGGGCGTTCCAGAGGACAAACCAAGGTCAAGATAACAGACGATTCATCAATGATG
TGGTGAAGATTTATTCTATCACAGCCACTAATGCAGTTGATGGGGTAGCAGCGTCATGTCGTGCCTGTGC
CCTGGGCTCTGAGCAGTCGGCCTCATCATGTGTACCCTGCCCCCCAGGCCACTACATTGAGAAGGAAACC
AACCAGTGCAAGGAGTGTCCAGCTGACACCTACCTGTCCATCCACCAGGTCTATGGCAAGGAAGCTTGCA
TTCCGTGTGGGCCTGGAAGTAAAAGCACCCAGGACCACTCGCTTTGCTATAGCGACTGCTTTTTCTACCA
TGAAAAAGAAAACCAGACTCTGCACTATGACTTCCGCAACCTCAGCAGTGTAGGCTCGCTGATGAATGGC
CCCAGCTTCACCTCCAAGGGAACGAAATACTTCCATTTCTTCAATATCAGTTTATGTGGACATGAGGGGA
GAAAGATGGCTCTCTGTACCAACAATATTTCAGACTTTACGGTAAAGGAAATGGTGACAGGGTCAGATGA
TTACACAAATTTGGTTGGAGCATTTGTATGCCAGTCAACTATTATTCCTTCTGAAAGTAAGGGCTTCCGG
GCAGCCCTGTCGTCACAGTCTATCATTCTGGCAGATATGTTTTTAGGTGTCACTGTTGACACTGCCTTGC
AAAACGTTAATATCAAGGAGGATATGTTCCCAGTGTCACCGAGCCAAGTACCAGATGTTCATTTCTTTTA
TAAGTCTTCCACAGCCACCACATCTTGTATTAATGGACGATCGACTGCTGTGAAGATGAGGTGTAATCCC
ATGAGACCTGGTGCAGGTGTGATATCAGTCCCCAGCAAGTGTCCAGCTGGCACCTGTGATGGTTGTACCT
TCTACTTTCTATGGGAGAGTGCAGAAGCTTGCCCTCTGTGCACAGAACATGACTTCCATGAGATCGAGGG
AGCCTGCAAGAGAGGGCTTCAGGAAATATTATATGTATGGAATGAACCTAAGTGGTGCATTAAAGGAATT
TCTTTGCCCGAAAAGAAGTTGTCAACCTGCGAAACTGTTGACTTTTGGCTGAAAGTGGGAGCTGGTGTGG
GCGCGTTCACAGCCGTTTTGTTGGTGGCTTTAACATGCTACTTTTGGAAAAAGAATCAAAAGCTGGAATA
CAAATATTCTAAATTAGTAATGACGACTAACTCAAAAGAGTGTGAACTCCCAGCTGCAGACAGCTGTGCT
ATCATGGAAGGAGAAGATAATGAAGAGGATGTTGTATATTCCAACAAACAGTCACTACTAGGAAAACTTA
AGTCTTTGGCCACAAAGGTGAGAGCTGACTTTTAA

Translation (1014 aa):
MLLLTLRRAKGRDRGRPAGGPRRALSLPWSPAWICCWALAGCQAVWAGDSSSSGRPLPACQEKDYHFEYT
ECDSTGSRWRVAIPNSAVDCSGLPDPVKGKECTFSCASGEYLEMKNQVCSKCVEGTYSLGSGIKFDEWDE
LPAGFSNVATFMDTVVGPSDSRPDGCNNSSWLPRGNYIESNRDDCTVSLIYAVHLKKSGYVFFEYQYVDN
NIFFEFFIQNDQCQEMDATTDKWVKLTDNGEWGSHSVMLKSGTNILYWRTTGILMGSKAVKPVLVKNITI
EGVAYTSECFPCKPGTFSNKPGSFNCQMCPRNTYSEKGAKECIRCKEDSQFSEEGASECVDRPPCTTKDY
FQIHTPCDEEGKTQIMYKWIEPKICREDLTDAIRLPPSGEKKDCPPCNPGFYNNGSSSCHPCPPGTFSDG
TKECKSCPAGTEPALGFEYKWWNVLPANMKTSCFNVGNSKCDGMNGWEVAGDHIRSGAGGSDNDYLILNL
HIPGFKPPTSMTGATGSELGRITFVFETLCSADCVLYFMVDINRKSTNVVESWGGTKEKQAYTHVIFKNA
TFTFTWAFQRTNQGQDNRRFINDVVKIYSITATNAVDGVAASCRACALGSEQSASSCVPCPPGHYIEKET
NQCKECPADTYLSIHQVYGKEACIPCGPGSKSTQDHSLCYSDCFFYHEKENQTLHYDFRNLSSVGSLMNG
PSFTSKGTKYFHFFNISLCGHEGRKMALCTNNISDFTVKEMVTGSDDYTNLVGAFVCQSTIIPSESKGFR
AALSSQSIILADMFLGVTVDTALQNVNIKEDMFPVSPSQVPDVHFFYKSSTATTSCINGRSTAVKMRCNP
MRPGAGVISVPSKCPAGTCDGCTFYFLWESAEACPLCTEHDFHEIEGACKRGLQEILYVWNEPKWCIKGI
SLPEKKLSTCETVDFWLKVGAGVGAFTAVLLVALTCYFWKKNQKLEYKYSKLVMTTNSKECELPAADSCA
IMEGEDNEEDVVYSNKQSLLGKLKSLATKVRADF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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