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Report for CCDS89843.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89843.1 Public Mus musculus 4 Runx3 23 108 98 CCDS HistoryNCBI Gene:12399Re-query CCDS DB by CCDS ID:89843.1Re-query CCDS DB by GeneID:12399See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89843.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000119564.1 ENSMUSP00000113159.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000119564.1Link to Ensembl Protein Viewer:ENSMUSP00000113159.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000119564Re-query CCDS DB by Protein ID:ENSMUSP00000113159
Original member Current member NCBI NM_001369050.1 NP_001355979.1 Accepted alive Link to Nucleotide Sequence:NM_001369050.1Link to Protein Sequence:NP_001355979.1Re-query CCDS DB by Nucleotide ID:NM_001369050Re-query CCDS DB by Protein ID:NP_001355979Link to BLAST:NP_001355979.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001355979.1 409 Q64131-1 409 100% 0 0

Chromosomal Locations for CCDS 89843.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 135152772 135153056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135155282 135155438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135163231 135163335 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135171109 135171258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 135175300 135175832 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1230 nt):
ATGCGTATTCCCGTAGACCCGAGCACCAGCCGCCGCTTCACTCCCCCCTCCACGGCCTTCCCCTGCGGCG
GCGGCGGCGGCGGCAAGATGGGCGAGAACAGCGGCGCGCTAAGCGCGCAGGCAACCGCGGGCCCCGGCGG
CCGCACCCGGCCCGAAGTGCGCTCGATGGTGGACGTGCTGGCCGACCACGCGGGAGAGCTCGTGCGCACC
GACAGCCCCAACTTCCTCTGCTCCGTGCTGCCCTCGCACTGGCGCTGCAACAAGACGCTGCCGGTCGCCT
TCAAGGTGGTGGCCCTGGGGGATGTGCCGGATGGAACGGTGGTGACCGTGATGGCCGGCAATGATGAGAA
CTACTCCGCCGAGCTGCGCAACGCTTCCGCTGTCATGAAGAACCAAGTGGCCAGGTTCAACGACCTTCGA
TTCGTGGGCCGCAGTGGGCGAGGGAAGAGTTTCACGCTCACAATCACCGTGTTCACCAACCCTACCCAAG
TGGCTACCTACCACCGAGCCATCAAGGTCACTGTGGATGGACCCCGGGAACCCCGACGGCACCGGCAGAA
GATAGAAGACCAGACCAAGGCCTTCCCCGACCGCTTTGGAGACCTGCGCATGCGTGTAACACCAAGCACA
CCCAGCCCCCGTGGCTCTCTCAGCACCACGAGCCACTTCAGCAGCCAGGCCCAGACCCCAATCCAAGGCT
CCTCAGACCTGAACCCCTTCTCCGACCCCCGCCAGTTTGACCGCTCCTTCCCTACGCTGCAGAGCCTCAC
AGAGAGCCGCTTCCCGGACCCCAGGATGCACTACCCGGGAGCCATGTCTGCCGCCTTCCCCTACAGCGCC
ACACCATCGGGCACCAGCCTGGGCAGCCTGAGCGTGGCGGGCATGCCGGCCAGCAGCCGCTTCCACCACA
CCTACCTCCCTCCGCCCTACCCCGGGGCCCCACAGAGCCAGAGCGGGCCCTTTCAGGCCAACCCCGCGCC
CTACCACCTCTTTTACGGCGCCTCCTCCGGCTCCTACCAGTTCTCCATGGCAGCCGCGGGAGGTGGTGAG
CGCTCGCCCACCCGCATGCTGACCTCCTGCCCCAGCGGCGCTTCGGTGTCAGCAGGCAACCTCATGAACC
CCAGCCTGGGCCAGGCTGATGGCGTGGAAGCCGACGGCAGCCACAGCAACTCGCCCACGGCCCTGAGCAC
GCCGGGCCGCATGGACGAGGCCGTGTGGCGGCCCTACTAA

Translation (409 aa):
MRIPVDPSTSRRFTPPSTAFPCGGGGGGKMGENSGALSAQATAGPGGRTRPEVRSMVDVLADHAGELVRT
DSPNFLCSVLPSHWRCNKTLPVAFKVVALGDVPDGTVVTVMAGNDENYSAELRNASAVMKNQVARFNDLR
FVGRSGRGKSFTLTITVFTNPTQVATYHRAIKVTVDGPREPRRHRQKIEDQTKAFPDRFGDLRMRVTPST
PSPRGSLSTTSHFSSQAQTPIQGSSDLNPFSDPRQFDRSFPTLQSLTESRFPDPRMHYPGAMSAAFPYSA
TPSGTSLGSLSVAGMPASSRFHHTYLPPPYPGAPQSQSGPFQANPAPYHLFYGASSGSYQFSMAAAGGGE
RSPTRMLTSCPSGASVSAGNLMNPSLGQADGVEADGSHSNSPTALSTPGRMDEAVWRPY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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