NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS8984.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8984.1 Public Homo sapiens 12 RAP1B 24 110 108 CCDS HistoryNCBI Gene:5908Re-query CCDS DB by CCDS ID:8984.1Re-query CCDS DB by GeneID:5908See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8984.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000250559.14 ENSP00000250559.9 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000250559.14Link to Ensembl Protein Viewer:ENSP00000250559.9Re-query CCDS DB by Nucleotide ID:ENST00000250559Re-query CCDS DB by Protein ID:ENSP00000250559
Original member Current member EBI ENST00000393436.9 ENSP00000377085.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393436.9Link to Ensembl Protein Viewer:ENSP00000377085.5Re-query CCDS DB by Nucleotide ID:ENST00000393436Re-query CCDS DB by Protein ID:ENSP00000377085
Original member Current member EBI ENST00000537460.5 ENSP00000439966.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000537460.5Link to Ensembl Protein Viewer:ENSP00000439966.1Re-query CCDS DB by Nucleotide ID:ENST00000537460Re-query CCDS DB by Protein ID:ENSP00000439966
Original member Current member EBI ENST00000341355.9 ENSP00000441275.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000341355.9Link to Ensembl Protein Viewer:ENSP00000441275.1Re-query CCDS DB by Nucleotide ID:ENST00000341355Re-query CCDS DB by Protein ID:ENSP00000441275
Original member Current member NCBI NM_001010942.3 NP_001010942.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001010942.3Link to Protein Sequence:NP_001010942.1Re-query CCDS DB by Nucleotide ID:NM_001010942Re-query CCDS DB by Protein ID:NP_001010942Link to BLAST:NP_001010942.1
Original member Current member NCBI NM_015646.6 NP_056461.1 Accepted alive Link to Nucleotide Sequence:NM_015646.6Link to Protein Sequence:NP_056461.1Re-query CCDS DB by Nucleotide ID:NM_015646Re-query CCDS DB by Protein ID:NP_056461Link to BLAST:NP_056461.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001010942.1 184 P61224-1 184 100% 0 0
NP_056461.1 184 P61224-1 184 100% 0 0

Chromosomal Locations for CCDS 8984.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 68648725 68648781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 68650400 68650468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 68651995 68652051 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 68654112 68654252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 68656306 68656449 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 68657101 68657187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (555 nt):
ATGCGTGAGTATAAGCTAGTCGTTCTTGGCTCAGGAGGCGTTGGAAAGTCTGCTTTGACTGTACAATTTG
TTCAAGGAATTTTTGTAGAAAAATACGATCCTACGATAGAAGATTCTTATAGAAAGCAAGTTGAAGTAGA
TGCACAACAGTGTATGCTTGAAATCTTGGATACTGCAGGAACGGAGCAATTTACAGCAATGAGGGATTTA
TACATGAAAAATGGACAAGGATTTGCATTAGTTTATTCCATCACAGCACAGTCCACATTTAACGATTTAC
AAGACCTGAGAGAACAGATTCTTCGAGTTAAAGACACTGATGATGTTCCAATGATTCTTGTTGGTAATAA
GTGTGACTTGGAAGATGAAAGAGTTGTAGGGAAGGAACAAGGTCAAAATCTAGCAAGACAATGGAACAAC
TGTGCATTCTTAGAATCTTCTGCAAAATCAAAAATAAATGTTAATGAGATCTTTTATGACCTAGTGCGGC
AAATTAACAGAAAAACTCCAGTGCCTGGGAAGGCTCGCAAAAAGTCATCATGTCAGCTGCTTTAA

Translation (184 aa):
MREYKLVVLGSGGVGKSALTVQFVQGIFVEKYDPTIEDSYRKQVEVDAQQCMLEILDTAGTEQFTAMRDL
YMKNGQGFALVYSITAQSTFNDLQDLREQILRVKDTDDVPMILVGNKCDLEDERVVGKEQGQNLARQWNN
CAFLESSAKSKINVNEIFYDLVRQINRKTPVPGKARKKSSCQLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH