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Report for CCDS89802.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89802.1 Public Mus musculus 4 Osbpl9 23 108 98 CCDS HistoryNCBI Gene:100273Re-query CCDS DB by CCDS ID:89802.1Re-query CCDS DB by GeneID:100273See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 89802.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000030288.13 ENSMUSP00000030288.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000030288.13Link to Ensembl Protein Viewer:ENSMUSP00000030288.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000030288Re-query CCDS DB by Protein ID:ENSMUSP00000030288
Original member Current member NCBI NM_001368727.1 NP_001355656.1 Accepted alive Link to Nucleotide Sequence:NM_001368727.1Link to Protein Sequence:NP_001355656.1Re-query CCDS DB by Nucleotide ID:NM_001368727Re-query CCDS DB by Protein ID:NP_001355656Link to BLAST:NP_001355656.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001355656.1 736 A2A8Z1-1 736 100% 0 0

Chromosomal Locations for CCDS 89802.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 109062258 109062332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109062465 109062600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109063366 109063457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109064563 109064641 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109065624 109065764 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109065865 109065928 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109066128 109066238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109066915 109066999 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109068363 109068534 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109071943 109072028 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109072814 109072932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109073037 109073149 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109083089 109083248 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109086327 109086431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109087395 109087485 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109091661 109091699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109098503 109098553 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109099921 109099950 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109101116 109101163 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109102497 109102592 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109133744 109133820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109156655 109156733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109172274 109172324 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 109202105 109202215 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2211 nt):
ATGGCGTCCATCGTGGAAGGGCCGCTGAGCAAATGGACTAACGTGATGAAGGGATGGCAGTATCGTTGGT
TCGTGCTGGACTACAATGCAGGGCTGCTCTCCTACTACACGTCCAAGGACAAAATGATGAGAGGCTCTCG
AAGAGGATGCGTTAGACTCAGAGGAGCTGTGATTGGTATAGACGACGAGGACGACAGCACCTTCACAATC
ACTGTCGATCAGAAAACCTTCCACTTCCAGGCTCGAGATGCAGACGAGCGAGAGAAGTGGATCCATGCCT
TAGAAGAAACTATTCTTCGCCATACTCTTCAGCTTCAAGGTTTGGATTCAGGATTCATCCCCAGTGTCCA
AGACTTTGATAAGAAACTTACCGAGGCTGACGCGTACCTGCAGATCTTGATAGAACAATTAAAGCTTTTT
GATGACAAGCTTCAAAATTGTAAAGATGATGAACAGAGAAAGAAAGTTGAAACTCTCAAAGACACAACAA
ATAGCATGGTAGAATCAATTAAACACTGCATTGTGTTGCTACAGATTGCTAAAGACCAGAGTAATGCGGA
GCAGCACGCAGATGGAATTATAAGTACTATTAATCCTGTAGATGCAATATACCAGCCTAGTCCCTTGGAA
CCTGTGATCAGCACAATGCCTTCCCAGACTGCCTTACCTCCAGAACCCGCTCAGTTGTGTAAGTCAGAGC
AGCGTCCATCTTCCTTACCTGTTGGACCTGTGTTAGCTACCTTGGGACATCATCAGACTCCAACACCAAA
TAGTACAGGCAGTGGGAACTCACCACCTAGCAGCAGTCTGACTCCTCCCAGCCATGTCAACTTGTCTCCA
AATACAGTCCCAGAGTTCTCTTACTCTAGCAGTGAAGATGAGTTCTATGATGCTGATGAATTCCATCAAA
GTGGCTCGTCCCCAAAGCGCTTAATAGATTCTTCTGGATCTGCCTCAGTCTTGACACACAGCAGCTCCGG
AAATAGCTTAAAACGCCCAGATACCACAGAGTCTCTGAATTCCTCCATGTCCAATGGCACAAGCGATGCT
GATCTTTTTGACTCACATGACGACAGAGATGATGATGGGGAGGCTGGGTCAGTGGAGGAGCACAAGAGCG
TTATCATGCACCTCTTATCACAAGTCAGGCTGGGGATGGACCTCACAAAGGTAGTTCTTCCAACGTTTAT
TCTCGAGAGAAGATCTCTGTTAGAAATGTATGCAGACTTTTTCGCACATCCAGACCTGTTCGTGAGCATT
AGTGATCAGAAGGATCCCAGGGATCGAATGGTTCAGGTTGTGAAATGGTACCTCTCGGCCTTCCATGCAG
GAAGGAGAGGATCGGTGGCCAAAAAGCCGTACAATCCTATTTTGGGTGAGATCTTTCAGTGTCACTGGAC
GTTGCCGAATGATACTGAAGAGAACGCAGAGCTCGTTTCAGAAGGGCCGGTTCCCTGGGTTTCTAAGAAC
AGTGTAACATTTGTGGCTGAGCAAGTTTCCCACCATCCGCCCATTTCAGCCTTTTATGCTGAGTGTTTTA
ACAAGAAGATACAATTCAATGCTCATATCTGGACTAAATCAAAATTCCTTGGGATGTCAATTGGGGTACA
CAACATAGGTCAGGGCTGTGTCTCGTGTCTGGAGTACGATGAGCACTACATCCTCACGTTCCCCAATGGC
TATGGAAGGTCTATCCTGACAGTGCCCTGGGTGGAATTGGGAGGAGAATGCAATATCAACTGCTCCAAAA
CGGGTTACAGCGCAAACATCGTCTTCCACACTAAGCCTTTCTATGGGGGCAAGAAGCACAGAATTACTGC
AGAGATTTTTTCTCCGAATGACAAGAAATCCTTCTGCTCAATTGAAGGGGAATGGAATGGTATCATGTAT
GCAAAATACGCAACAGGGGAAAACACTGTCTTTGTAGACACCAAGAAATTGCCTATAATCAAGAAAAAGG
TGAGGAAGTTGGAAGATCAGAATGAGTATGAGTCCCGCAGCCTTTGGAAGGATGTCACTTTCAATTTAAA
AATCAGAGACATTGATGCAGCAACGGAAGCAAAGCACAGACTTGAAGAAAGACAAAGAGCAGAAGCCCGA
GAAAGGAAGGAGAAGGAAATTCAGTGGGAGACGAGGCTCTTTCACGAGGATGGCGAATGCTGGGTTTACG
ATGAGCCTTTACTGAAGCGTCTTGGTGCTGTGAAGCATTAG

Translation (736 aa):
MASIVEGPLSKWTNVMKGWQYRWFVLDYNAGLLSYYTSKDKMMRGSRRGCVRLRGAVIGIDDEDDSTFTI
TVDQKTFHFQARDADEREKWIHALEETILRHTLQLQGLDSGFIPSVQDFDKKLTEADAYLQILIEQLKLF
DDKLQNCKDDEQRKKVETLKDTTNSMVESIKHCIVLLQIAKDQSNAEQHADGIISTINPVDAIYQPSPLE
PVISTMPSQTALPPEPAQLCKSEQRPSSLPVGPVLATLGHHQTPTPNSTGSGNSPPSSSLTPPSHVNLSP
NTVPEFSYSSSEDEFYDADEFHQSGSSPKRLIDSSGSASVLTHSSSGNSLKRPDTTESLNSSMSNGTSDA
DLFDSHDDRDDDGEAGSVEEHKSVIMHLLSQVRLGMDLTKVVLPTFILERRSLLEMYADFFAHPDLFVSI
SDQKDPRDRMVQVVKWYLSAFHAGRRGSVAKKPYNPILGEIFQCHWTLPNDTEENAELVSEGPVPWVSKN
SVTFVAEQVSHHPPISAFYAECFNKKIQFNAHIWTKSKFLGMSIGVHNIGQGCVSCLEYDEHYILTFPNG
YGRSILTVPWVELGGECNINCSKTGYSANIVFHTKPFYGGKKHRITAEIFSPNDKKSFCSIEGEWNGIMY
AKYATGENTVFVDTKKLPIIKKKVRKLEDQNEYESRSLWKDVTFNLKIRDIDAATEAKHRLEERQRAEAR
ERKEKEIQWETRLFHEDGECWVYDEPLLKRLGAVKH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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