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Report for CCDS89773.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89773.1 Public Mus musculus 4 Bnc2 23 108 98 CCDS HistoryNCBI Gene:242509Re-query CCDS DB by CCDS ID:89773.1Re-query CCDS DB by GeneID:242509See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89773.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107198.8 ENSMUSP00000102816.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107198.8Link to Ensembl Protein Viewer:ENSMUSP00000102816.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107198Re-query CCDS DB by Protein ID:ENSMUSP00000102816
Original member NCBI NM_001369083.1 NP_001356012.1 Updated not alive Link to Nucleotide Sequence:NM_001369083.1Link to Protein Sequence:NP_001356012.1Re-query CCDS DB by Nucleotide ID:NM_001369083Re-query CCDS DB by Protein ID:NP_001356012
Current member NCBI NM_001369083.2 NP_001356012.1 Accepted alive Link to Nucleotide Sequence:NM_001369083.2Link to Protein Sequence:NP_001356012.1Re-query CCDS DB by Nucleotide ID:NM_001369083Re-query CCDS DB by Protein ID:NP_001356012Link to BLAST:NP_001356012.1

Chromosomal Locations for CCDS 89773.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 84275787 84276447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 84291693 84293662 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 84390889 84391124 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 84414246 84414348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 84546205 84546405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 84555779 84555904 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 84674975 84674977 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3300 nt):
ATGGCACGTTTTGTGCCCTCCCCGCCTCCAAATTGCCTCAGTTACAAATCAGAGGGCAGGCTTGGTGAGC
AAGACTGGCAAGCACATTTTAAGGTCCCGTGCTGTGGGGTTGATCCATCTCAACTTGAGTCAGAAGAGGC
AGAAGTGGATGTGAGAGAAAGAGACACACAGAGAGACAGAGAGCCAAAGAGGGCAAGAGACTTGACTTTA
AGAGACTCCTGTACTGACAACTCCATGCAGTTCGGAACCAGAACAACTGCGGCTGAACCAGGGTTCATGG
GGACATGGCAAAACGCTGACACTAACCTCTTATTCAGAATGTCCCAACAGGCCATCCGCTGCACATTGGT
AAACTGCACGTGTGAGTGTTTCCAGCCTGGGAAGATTAACCTGCGGACGTGTGATCAGTGTAAACATGGC
TGGGTGGCACATGCCTTGGATAAACTCAGCACACAGCACCTGTACCACCCCACTCAAGTGGAGATTGTGC
AGTCCAACGTGGTGTTTGACATCAGCAGCCTGATGCTCTACGGGACGCAGGCAGTGCCTGTGCGGCTAAA
GATACTGCTAGACCGGCTCTTCAGTGTCCTGAAGCAAGAGGAAGTGCTGCACATACTACATGGCTTGGGC
TGGACCCTGAGGGACTATGTCCGAGGATACATCCTTCAGGACGCTGCTGGCAAGGTACTGGACCGCTGGG
CCATCATGTCTCGGGAAGAAGAAATCATCACCCTTCAGCAGTTTCTGCGGTTTGGGGAAACCAAATCCAT
CGTGGAGCTGATGGCAATTCAGGAGAAAGAAGGGCAAGCCGTGGCTGTACCATCTTCAAAGACAGACTCG
GATATAAGGACTTTCATTGAGAGCAATAATCGCACCAGGAGTCCTAGCCTCCTTGCTCACTTAGAGAACA
GCAATCCTTCCAGCATCCATCATTTTGAAAACATACCAAACAGCCTTGCATTTCTGCTTCCATTCCAGTA
TATAAACCCCGTGTCTGCCCCACTGTTAGGGTTGCCGCCCAACGGGCTGCTTTTGGAGCAGCCGGGGCTG
AGGCTGAGGGAACCGAGCATTTCAACTCAGAATGAGTACAATGAGAGCAGTGAATCTGAAGTATCGCCTA
CACCATATAAGAGTGATCAGACGCCCAATAGAAATGCCCTGACTAGCATCACTAATGTGGAACCCAAAAC
CGAGCCAGCATGTGTCTCCCCCATTCAGAATTCTGCCCCAGTCAGTGACCTAAGCAAAACTGAACACCCA
AAAAGCTCATTCCGGATTCACCGTATGAGAAGGATGGGGTCAGCCTCCAGGAAAGGAAGGGTATTCTGTA
ATGCTTGTGGGAAGACGTTCTATGACAAAGGGACTCTCAAAATTCACTATAATGCTGTTCACCTGAAGAT
TAAACACCGATGTACCATTGAAGGTTGCAACATGGTCTTTAGTTCCCTTCGAAGCCGGAATCGCCACAGT
GCAAACCCCAACCCCCGCCTTCATATGCCTATGCTAAGGAATAACCGAGACAAAGATTTAATCCGGGCTA
CATCAGGAGCTGCCACTCCAGTCATAGCAAGTACAAAATCAAATCTCACACTCACGAGTCCTGGCCGGCC
CCCGATGGGTTTTACCACCCCTCCACTAGACCCCGTCTTACAGAACCCTCTCCCAAGCCAGCTGGTATTT
TCTGGGCTAAAGACTGTACAGCCAGTTCCTCCTTTTTATAGAAGTTTACTTACTCCAGGGGAAATGGTGA
GTCCTCCAACCTCCCTCCCAACCAGTCCCATCATTCCGACCAGTGGCACCATAGAACAGCACCCTCCTCC
ACCCTCTGAGCCAATAGTGCCGGCAGTGATGATGGGCACTCATGAGCCCAGCGCTGACCTGGCACCTAAG
AAAAAGCCTAGGAAGTCAAGCATGCCTGTAAAAATTGAGAAGGAAATCATCGACACTGCCGACGAGTTTG
ACGATGAAGACGACGATCCTAATGACGGCGGGACCGTGGTCAATGACATGAGCCATGACAATCACTGTCA
TTCCCAAGATGAGATGAGCCCAGGCATGTCCGTGAAGGACTTCTCTAAGCATAACAGGACCCGGTGCATT
TCAAGAACTGAAATAAGAAGGGCTGACAGTATGACGTCTGAGGACCAGGAGCCCGAGCGGGACTATGAGA
ACGAGTCCGAATCCTCAGAGCCTAAGCTCGGTGAGGAATCCATGGAGGGGGATGAACACCTTCACAGTGA
GGTGAGCGAGAAGGTCCTGATGAACAGCGAGAGGCCCGACGAGAACCACAGCGAGCCGTCCCACCAGGAC
GTCATCAAGGTAAAGGAAGAATTTACAGACCCCACTTACGACATGTTCTACATGAGCCAGTACGGACTAT
ACAACGGTGGCGGGGCCAGCATGGCTGCCCTGCATGAAAGTTTTACATCGTCTCTGAATTATGGAAGCCC
TCAAAAGTTCTCCCCTGAAGGTGACCTGTGTTCTAGTCCAGACCCCAAAATCTGTTATGTGTGCAAGAAG
AGCTTCAAAAGCTCCTACAGTGTGAAGCTTCACTACAGGAACGTTCACTTAAAAGAGATGCACGTCTGCA
CGGTGGCTGGGTGCAATGCCGCCTTCCCCTCTCGTCGAAGCAGAGACAGACACAGTGCCAATATAAACCT
GCATCGTAAACTGTTGACCAAAGAACTGGATGACATGAGCCTGGACTCATCGCAGCCCTCCCTTAGCAAG
GACCTCCGGGATGAATTTTTGATGAAGATCTATGGTGCCCAGCACCCTCTGGGGCTCGATGGCAGGGAAG
ATGCCTCCTCTCCCGCAGGGACTGAAGACTCCCACCTGAATGGGTACGGGAGAGGCATGGCAGAGGACTA
CATGGTCCTTGACCTGAGTACCACCTCCAGCCTCCAGTCCAGCAGCAGTGTCCATTCCTCCAGAGAGTCC
GATGCAGGCAGCGATGAGGGGATTCTTCTCGACGACATCGATGGCGCGAGTGACAGTGGGGAATCCACTC
ACAAGGCCGAGGCCCCCACCCTCCCCGGCAGCCTCGGGGCTGAAGTTTCAGGATCTCTTATGTTCAGCAG
TTTGTCTGGGAGCAATGGTGGGATCATGTGCAACATTTGCCACAAAATGTACAGCAACAAGGGGACCCTG
CGGGTCCACTACAAAACTGTGCATTTGCGAGAGATGCATAAGTGCAAAGTCCCCGGCTGTAACATGATGT
TCTCCTCTGTGCGAAGCCGAAACAGGCACAGCCAGAACCCCAATCTTCACAAAAACATTCCCTTCACTTC
AATAGATTAG

Translation (1099 aa):
MARFVPSPPPNCLSYKSEGRLGEQDWQAHFKVPCCGVDPSQLESEEAEVDVRERDTQRDREPKRARDLTL
RDSCTDNSMQFGTRTTAAEPGFMGTWQNADTNLLFRMSQQAIRCTLVNCTCECFQPGKINLRTCDQCKHG
WVAHALDKLSTQHLYHPTQVEIVQSNVVFDISSLMLYGTQAVPVRLKILLDRLFSVLKQEEVLHILHGLG
WTLRDYVRGYILQDAAGKVLDRWAIMSREEEIITLQQFLRFGETKSIVELMAIQEKEGQAVAVPSSKTDS
DIRTFIESNNRTRSPSLLAHLENSNPSSIHHFENIPNSLAFLLPFQYINPVSAPLLGLPPNGLLLEQPGL
RLREPSISTQNEYNESSESEVSPTPYKSDQTPNRNALTSITNVEPKTEPACVSPIQNSAPVSDLSKTEHP
KSSFRIHRMRRMGSASRKGRVFCNACGKTFYDKGTLKIHYNAVHLKIKHRCTIEGCNMVFSSLRSRNRHS
ANPNPRLHMPMLRNNRDKDLIRATSGAATPVIASTKSNLTLTSPGRPPMGFTTPPLDPVLQNPLPSQLVF
SGLKTVQPVPPFYRSLLTPGEMVSPPTSLPTSPIIPTSGTIEQHPPPPSEPIVPAVMMGTHEPSADLAPK
KKPRKSSMPVKIEKEIIDTADEFDDEDDDPNDGGTVVNDMSHDNHCHSQDEMSPGMSVKDFSKHNRTRCI
SRTEIRRADSMTSEDQEPERDYENESESSEPKLGEESMEGDEHLHSEVSEKVLMNSERPDENHSEPSHQD
VIKVKEEFTDPTYDMFYMSQYGLYNGGGASMAALHESFTSSLNYGSPQKFSPEGDLCSSPDPKICYVCKK
SFKSSYSVKLHYRNVHLKEMHVCTVAGCNAAFPSRRSRDRHSANINLHRKLLTKELDDMSLDSSQPSLSK
DLRDEFLMKIYGAQHPLGLDGREDASSPAGTEDSHLNGYGRGMAEDYMVLDLSTTSSLQSSSSVHSSRES
DAGSDEGILLDDIDGASDSGESTHKAEAPTLPGSLGAEVSGSLMFSSLSGSNGGIMCNICHKMYSNKGTL
RVHYKTVHLREMHKCKVPGCNMMFSSVRSRNRHSQNPNLHKNIPFTSID


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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