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Report for CCDS89770.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89770.1 Public Mus musculus 4 Snapc3 23 108 98 CCDS HistoryNCBI Gene:77634Re-query CCDS DB by CCDS ID:89770.1Re-query CCDS DB by GeneID:77634See the combined annotation on chromosome 4 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89770.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000071544.10 ENSMUSP00000102842.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000071544.10Link to Ensembl Protein Viewer:ENSMUSP00000102842.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000071544Re-query CCDS DB by Protein ID:ENSMUSP00000102842
Original member Current member NCBI NM_001358795.1 NP_001345724.1 Accepted alive Link to Nucleotide Sequence:NM_001358795.1Link to Protein Sequence:NP_001345724.1Re-query CCDS DB by Nucleotide ID:NM_001358795Re-query CCDS DB by Protein ID:NP_001345724Link to BLAST:NP_001345724.1

Chromosomal Locations for CCDS 89770.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 4 (NC_000070.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4See the combined annotation on chromosome 4 in Sequence Viewer

Chromosome Start Stop Links
4 83417753 83418054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83418706 83418783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83427782 83427866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83435191 83435295 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83436324 83436473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4
4 83441887 83441976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 4Link to Ensembl Genome Browser on chromosome 4

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (810 nt):
ATGGCGGAGGACCTGCAGGGCGGCGGTGCGGGTGGCCCACAGCACCCAGTCCCCAGTGCGAGCCACAGCA
GCTTTCCGGAATACGAGCTTCCCGAGTTGCACACGCGCGTGTTCCATGTGGGCTCCTTTGGGGAGCTATG
GCGTGGCCGGCTAGGGGCCCAGGATTTGTCGCTGAGCGAACCGCAGGCAGCCGAGCAGCCGACCGACGGA
GGGGCATCCAACGACGGCTTTGAGGATGCTGCAGTAGCCAGCGATCTGGGCTGCAGTCTGGAGGCAGCAG
CAGAGCTGAGGGTCGTGTGCGGCCTTGATAAACTGAGATGCCTCGGGGAAGATGAAGACCCGGAAGTCAT
CCCAGAGAACACTGACCTAGTGACTTTATGTGTGAGGAAGGGGCTTTTGGACTATCGGGAAGAAAACATC
ACAATAGATCGCGCCTGTAGACAAGAAATATTTGCTTATGAAATGGAATCTCATGCACTAGGGAAGAAAC
CTGAAAACCCAGCAGACATGATTGAAGAAGGAGAGTGTATCCTATCTGTGAACATCTTATATCCTGTTAT
ATTTAATAAGCACAAAGAACACAAACCATACCAGACCATGTTGGTACTGGGCAGTCAGAAGCTCACAGAA
CTGAGAGATTCAATTTGCTGTGTCAGTGACCTCCAGATCGGTGGAGAATTCAGCAACGCGCCAGACCAAG
CCCCTGAGCACATCAGCAAAGACCTCTACAAGTCGGCTTTTTTCTATTTTGAAGGAACATTTTACAATGA
CAGAAGATACCCAGAATGCAGAGACTTGAGCAGGTACTAA

Translation (269 aa):
MAEDLQGGGAGGPQHPVPSASHSSFPEYELPELHTRVFHVGSFGELWRGRLGAQDLSLSEPQAAEQPTDG
GASNDGFEDAAVASDLGCSLEAAAELRVVCGLDKLRCLGEDEDPEVIPENTDLVTLCVRKGLLDYREENI
TIDRACRQEIFAYEMESHALGKKPENPADMIEEGECILSVNILYPVIFNKHKEHKPYQTMLVLGSQKLTE
LRDSICCVSDLQIGGEFSNAPDQAPEHISKDLYKSAFFYFEGTFYNDRRYPECRDLSRY


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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