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Report for CCDS89611.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
89611.1 Public Mus musculus 2 Oprl1 23 108 98 CCDS HistoryNCBI Gene:18389Re-query CCDS DB by CCDS ID:89611.1Re-query CCDS DB by GeneID:18389See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 23, NCBI annotation release 108, Ensembl annotation release 98

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 89611.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000238942.1 ENSMUSP00000159197.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000238942.1Link to Ensembl Protein Viewer:ENSMUSP00000159197.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000238942Re-query CCDS DB by Protein ID:ENSMUSP00000159197
Original member Current member NCBI NM_001318919.1 NP_001305848.1 Accepted alive Link to Nucleotide Sequence:NM_001318919.1Link to Protein Sequence:NP_001305848.1Re-query CCDS DB by Nucleotide ID:NM_001318919Re-query CCDS DB by Protein ID:NP_001305848Link to BLAST:NP_001305848.1

Chromosomal Locations for CCDS 89611.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 181715723 181715946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181718377 181718732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 181718814 181719424 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair. This works on the replacement symbol in the Translation Exceptions section also.

Translation Exceptions:
replace the symbol * (codon TGA) with X at amino acid position 368

Nucleotide Sequence (1191 nt):
ATGGAGTCCCTCTTTCCTGCCCCATTCTGGGAGGTCTTGTATGGCAGCCACTTTCAAGGGAACCTGTCTC
TCCTAAATGAGACCGTACCCCATCACCTGCTCCTCAATGCTAGCCACAGTGCCTTCCTGCCCCTTGGACT
CAAGGTCACCATCGTGGGGCTCTACTTGGCTGTGTGCATCGGGGGGCTCCTGGGGAACTGCCTCGTCATG
TATGTCATCCTCAGGCACACCAAGATGAAGACTGCTACCAACATTTACATATTTAATCTGGCACTGGCTG
ATACCCTGGTCTTGCTGACACTGCCCTTCCAGGGCACAGACATCCTTCTGGGCTTCTGGCCATTTGGGAA
TGCACTGTGCAAGACGGTCATTGCTATCGACTACTACAACATGTTTACCAGCACTTTCACTTTGACTGCC
ATGAGTGTAGACCGTTATGTAGCTATCTGCCACCCTATCCGTGCCCTTGATGTTCGGACATCCAGTAAAG
CCCAGGCCGTTAATGTGGCCATATGGGCCCTGGCTTCGGTGGTTGGTGTTCCTGTTGCCATCATGGGCTC
AGCACAAGTGGAGGATGAAGAGATCGAGTGCCTGGTGGAGATCCCCGCCCCTCAGGACTATTGGGGCCCT
GTATTTGCCATCTGCATCTTCCTTTTTTCCTTCATCATCCCGGTTCTGATCATCTCTGTCTGCTACAGCC
TCATGATTCGACGACTTCGTGGTGTCCGGCTGCTTTCAGGCTCCCGAGAGAAGGACCGGAACCTGCGACG
CATCACACGGCTGGTACTGGTAGTTGTGGCTGTGTTTGTGGGCTGCTGGACACCTGTGCAGGTCTTTGTC
CTGGTTCAAGGACTGGGTGTTCAGCCAGGTAGTGAGACTGCAGTAGCCATTCTGCGCTTCTGCACAGCCC
TGGGCTATGTCAACAGTTGTCTCAATCCCATTCTCTATGCTTTCTTGGATGAGAACTTCAAGGCCTGCTT
TAGAAAGTTCTGCTGTGCTTCTGCCCTGCACCGGGAGATGCAGGTTTCTGATCGTGTGCGCAGCATTGCC
AAGGATGTAGGCCTTGGTTGCAAGACCTCTGAGACAGTACCACGGCCGGCATGACTAGGCGTGGACCTGC
CCATGGTGCCTGTCAGTCCACAGAGCCCATCTACACCCAACACGGAGCTCACACAGGTCACTGCTCTCTA
G

Translation (396 aa):
MESLFPAPFWEVLYGSHFQGNLSLLNETVPHHLLLNASHSAFLPLGLKVTIVGLYLAVCIGGLLGNCLVM
YVILRHTKMKTATNIYIFNLALADTLVLLTLPFQGTDILLGFWPFGNALCKTVIAIDYYNMFTSTFTLTA
MSVDRYVAICHPIRALDVRTSSKAQAVNVAIWALASVVGVPVAIMGSAQVEDEEIECLVEIPAPQDYWGP
VFAICIFLFSFIIPVLIISVCYSLMIRRLRGVRLLSGSREKDRNLRRITRLVLVVVAVFVGCWTPVQVFV
LVQGLGVQPGSETAVAILRFCTALGYVNSCLNPILYAFLDENFKACFRKFCCASALHREMQVSDRVRSIA
KDVGLGCKTSETVPRPAXLGVDLPMVPVSPQSPSTPNTELTQVTAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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