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Report for CCDS8946.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
8946.1 Public Homo sapiens 12 PIP4K2C 24 110 108 CCDS HistoryNCBI Gene:79837Re-query CCDS DB by CCDS ID:8946.1Re-query CCDS DB by GeneID:79837See the combined annotation on chromosome 12 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 8946.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000354947.10 ENSP00000347032.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000354947.10Link to Ensembl Protein Viewer:ENSP00000347032.5Re-query CCDS DB by Nucleotide ID:ENST00000354947Re-query CCDS DB by Protein ID:ENSP00000347032
Original member Current member EBI ENST00000540759.6 ENSP00000439878.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000540759.6Link to Ensembl Protein Viewer:ENSP00000439878.2Re-query CCDS DB by Nucleotide ID:ENST00000540759Re-query CCDS DB by Protein ID:ENSP00000439878
Original member Current member NCBI NM_001146258.2 NP_001139730.1 Accepted alive Link to Nucleotide Sequence:NM_001146258.2Link to Protein Sequence:NP_001139730.1Re-query CCDS DB by Nucleotide ID:NM_001146258Re-query CCDS DB by Protein ID:NP_001139730Link to BLAST:NP_001139730.1
Original member Current member NCBI NM_024779.5 NP_079055.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_024779.5Link to Protein Sequence:NP_079055.3Re-query CCDS DB by Nucleotide ID:NM_024779Re-query CCDS DB by Protein ID:NP_079055Link to BLAST:NP_079055.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001139730.1 421 Q8TBX8-1 421 100% 0 0
NP_079055.3 421 Q8TBX8-1 421 100% 0 0

Chromosomal Locations for CCDS 8946.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 12 (NC_000012.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12See the combined annotation on chromosome 12 in Sequence Viewer

Chromosome Start Stop Links
12 57591290 57591463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57594025 57594122 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57595126 57595222 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57595888 57596031 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57599065 57599211 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57599400 57599438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57600324 57600437 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57600811 57601078 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57601245 57601348 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12
12 57601526 57601606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 12Link to Ensembl Genome Browser on chromosome 12

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1266 nt):
ATGGCGTCCTCCTCGGTCCCACCAGCCACGGTATCGGCGGCGACAGCAGGCCCCGGCCCAGGTTTCGGCT
TCGCCTCCAAGACCAAGAAGAAGCATTTCGTGCAGCAGAAGGTGAAGGTGTTCCGGGCGGCCGACCCGCT
GGTGGGTGTGTTCCTGTGGGGCGTAGCCCACTCGATCAATGAGCTCAGCCAGGTGCCTCCCCCGGTGATG
CTGCTGCCAGATGACTTTAAGGCCAGCTCCAAGATCAAGGTCAACAATCACCTTTTCCACAGGGAAAATC
TGCCCAGTCATTTCAAGTTCAAGGAGTATTGTCCCCAGGTCTTCAGGAACCTCCGTGATCGATTTGGCAT
TGATGACCAAGATTACTTGGTGTCCCTTACCCGAAACCCCCCCAGCGAAAGTGAAGGCAGTGATGGTCGC
TTCCTTATCTCCTACGATCGGACTCTGGTCATCAAAGAAGTATCCAGTGAGGACATTGCTGACATGCATA
GCAACCTCTCCAACTATCACCAGTACATTGTGAAGTGCCATGGCAACACGCTTCTGCCCCAGTTCCTGGG
GATGTACCGAGTCAGTGTGGACAACGAAGACAGCTACATGCTTGTGATGCGCAATATGTTTAGCCACCGT
CTTCCTGTGCACAGGAAGTATGACCTCAAGGGTTCCCTAGTGTCCCGGGAAGCCAGCGATAAGGAAAAGG
TTAAAGAATTGCCCACCCTTAAGGATATGGACTTTCTCAACAAGAACCAGAAAGTATATATTGGTGAAGA
GGAGAAGAAAATATTTCTGGAGAAGCTGAAGAGAGATGTGGAGTTTCTAGTGCAGCTGAAGATCATGGAC
TACAGCCTTCTGCTAGGCATCCACGACATCATTCGGGGCTCTGAACCAGAGGAGGAAGCGCCCGTGCGGG
AGGATGAGTCAGAGGTGGATGGGGACTGCAGCCTGACTGGACCTCCTGCTCTGGTGGGCTCCTATGGCAC
CTCCCCAGAGGGTATCGGAGGCTACATCCATTCCCATCGGCCCCTGGGCCCAGGAGAGTTTGAGTCCTTC
ATTGATGTCTATGCCATCCGGAGTGCTGAAGGAGCCCCCCAGAAGGAGGTCTACTTCATGGGCCTCATTG
ATATCCTTACACAGTATGATGCTAAGAAGAAAGCAGCTCATGCAGCCAAAACTGTCAAGCATGGGGCTGG
GGCAGAGATCTCTACTGTCCATCCGGAGCAGTATGCTAAGCGATTCCTGGATTTTATTACCAACATCTTT
GCCTAA

Translation (421 aa):
MASSSVPPATVSAATAGPGPGFGFASKTKKKHFVQQKVKVFRAADPLVGVFLWGVAHSINELSQVPPPVM
LLPDDFKASSKIKVNNHLFHRENLPSHFKFKEYCPQVFRNLRDRFGIDDQDYLVSLTRNPPSESEGSDGR
FLISYDRTLVIKEVSSEDIADMHSNLSNYHQYIVKCHGNTLLPQFLGMYRVSVDNEDSYMLVMRNMFSHR
LPVHRKYDLKGSLVSREASDKEKVKELPTLKDMDFLNKNQKVYIGEEEKKIFLEKLKRDVEFLVQLKIMD
YSLLLGIHDIIRGSEPEEEAPVREDESEVDGDCSLTGPPALVGSYGTSPEGIGGYIHSHRPLGPGEFESF
IDVYAIRSAEGAPQKEVYFMGLIDILTQYDAKKKAAHAAKTVKHGAGAEISTVHPEQYAKRFLDFITNIF
A


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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